View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8491_low_24 (Length: 392)
Name: NF8491_low_24
Description: NF8491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8491_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 17 - 369
Target Start/End: Original strand, 4922447 - 4922799
Alignment:
| Q |
17 |
tgttgaggaaacaaatggagacaaacaagaagaatgaattcgccctatttattacgaaagtatttagtactagacaatatcgtatcgaggatgtgaatgt |
116 |
Q |
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| T |
4922447 |
tgttgaggaaacaaatggaggcaaacaagaagaatgaattcgccctatttattactaaagtatttagtactagacaatatcgtgtcgaggatgtgaatgt |
4922546 |
T |
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| Q |
117 |
gaatgaacttaatgacctggcggcctttataaatgacaatctgaaggaaattgattggaggttgcaatcggcggaaattcaatctcaagaggaagctgga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4922547 |
gaatgaacttaatgacctggcggcctttataaatgacaatctgaaggaaattgattggaggttgcaatcggcggaaattcaatctcaagaggaagctgga |
4922646 |
T |
|
| Q |
217 |
aatggagctgaagatatgaatggaatagggaatgagggtaataagggtgatgcatctgggctggtgaatgtaggagatatgcaagctaatatgggcaatg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4922647 |
aatggagctgaagatatgaatggaatagggaatgagggtaataagggtgatgcatctgggctggtgaatgtaggagatatgcaagctaatatgggcaatg |
4922746 |
T |
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| Q |
317 |
gtgctgaggtccaaggtttggatagcaacgtgaaatatggcatggaaagtgat |
369 |
Q |
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| T |
4922747 |
gtgctgaggtccaaggtttggatagcaacgtgaaatatggcatggaaagtgat |
4922799 |
T |
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