View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8491_low_25 (Length: 384)
Name: NF8491_low_25
Description: NF8491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8491_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 117 - 364
Target Start/End: Complemental strand, 48706846 - 48706597
Alignment:
| Q |
117 |
taaatatttttgttttgttatccgcacttccttccaagtccaacactcccattttctacaactagatgcaggaaggaatcgcacgtaaatactatatcaa |
216 |
Q |
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| T |
48706846 |
taaatatttttgttttgttaaccgcacttccttccaagtccaacactcccattttctataactatatgcatgaaggaatagcacgtaaattctatatcaa |
48706747 |
T |
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| Q |
217 |
gaagtctttgttcacaaaatatcatgaaacacgttacggtttaaataaatcaa-ttttcttttgggtcgatggacaaatggtaaattgtaccaaaattta |
315 |
Q |
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| T |
48706746 |
gaagtctttgttcacaaaatatcatgaaacacgttacggtttaaataaatcaatttttcttttgggtcgatggacaaatggtaaattgtaccaaaattta |
48706647 |
T |
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| Q |
316 |
ctcatat-actataaagttttaagttcgtaaaagtgtttaatgtaataat |
364 |
Q |
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| T |
48706646 |
ctcatataactataaagttttaagttcgtaaaagtgttcaatgtaataat |
48706597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 48707623 - 48707561
Alignment:
| Q |
52 |
tatgtgtgaaggtttgtccctcatctacagagcagcatttcaaatgcagtttgtttgtttgaccttaa |
119 |
Q |
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| T |
48707623 |
tatgtgtgaaggtttgtccctcatctacagagcagcatt-----tgcagtttgtttgtttgaccttaa |
48707561 |
T |
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