View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8491_low_3 (Length: 702)
Name: NF8491_low_3
Description: NF8491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8491_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 395 - 659
Target Start/End: Original strand, 9668112 - 9668376
Alignment:
| Q |
395 |
caataaatcaaaaaccacaattgtagaaatacaatgaggtctttattcaaccaaaataatgttcaaatcgatttgctacacgacgaatgaattgcaaatt |
494 |
Q |
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| T |
9668112 |
caataaatcaaaaaccacaattgtagaaatacaatgaggtctttattcaaccaaaataatattcaaatcgatttgctacacgacgaatgaattgcaaatt |
9668211 |
T |
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| Q |
495 |
ttgctaaataatgtgcaacttaatttgctgcacggcgaatatgctataattttaaactattgaagcaaggagagaaactttttaagtatttaactattat |
594 |
Q |
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| T |
9668212 |
ttgctaaataatgtgcaacttaatttgctacacggcgaatatgctagaatttcaaactactgaagcaaggagacaaacttttgaagtatttaactattac |
9668311 |
T |
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| Q |
595 |
tcctacataagaatgatggttcttttctagaccaatgatgaatgtaatgagattcaaagagttgg |
659 |
Q |
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| T |
9668312 |
tcctacataagaatgatggttcttttctagaccaatgatgaatgtaatgagattcaaagagttgg |
9668376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 9667725 - 9667864
Alignment:
| Q |
9 |
cagagaaagagagtggcaagaaactagtgtttgaaaggannnnnnn-ctgtgtctggaatatggatttagaattgaatgggcttaaagaactagaagatg |
107 |
Q |
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| T |
9667725 |
cagagaaagagagtggcaagaaactagtgtttgaaaggattttttttctgtgtctggaatatggattg-gaattgaatgggcttaaagaactggaagatg |
9667823 |
T |
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| Q |
108 |
gactttgagaaatggcttatgtttttccaaagctaaggggg |
148 |
Q |
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| T |
9667824 |
gactatgagaaatggcttatgtttttccaaagctaaggggg |
9667864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 211 - 309
Target Start/End: Original strand, 9667927 - 9668026
Alignment:
| Q |
211 |
gtgttattctctcttattctttatattgt-aatagtccttgcggtcttttaccatctaagttgtacttatgaaacaaattgatattgttatttttggaag |
309 |
Q |
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| T |
9667927 |
gtgttattctctcttattctttatattgttaatagtccttacggtcttttaccatctaaattgtacgtatgaaacaaattgatattgttatttttggaag |
9668026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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