View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8491_low_31 (Length: 288)
Name: NF8491_low_31
Description: NF8491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8491_low_31 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 10 - 271
Target Start/End: Complemental strand, 49248279 - 49248018
Alignment:
| Q |
10 |
ttatactttattcttgatggggtatggactttcttcctatataaacatctgttttttaatgtgcaatcaagcctcactaaatcgcccaattcatgttcgc |
109 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49248279 |
ttatattttattcttgttggggtatggactttcttcctatataaacatctgttttttaatgtgcaatcaagcctcactaaatcgcccaattcatgttcgc |
49248180 |
T |
|
| Q |
110 |
aacttaaatacacatcaagtctaagcacttgtttgactctaaatgctttacacatatgatatgaaagattttcaacctaaactttactctaaatagtatc |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49248179 |
aacttaaatacacatcaagtctaagcacttgtttgactctaaatgctttacacatatgatatgaaagattttcaacctaaactttactctaaatagtatc |
49248080 |
T |
|
| Q |
210 |
tatcaggaagaaaacttcatgacgtggttgcatatcaaagacaatgagttgattcccgatct |
271 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
49248079 |
tatcaggaagtaaacttcatgacgtggttgcatatcaaagacaatgagttgactcccgatct |
49248018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University