View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8491_low_34 (Length: 271)
Name: NF8491_low_34
Description: NF8491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8491_low_34 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 271
Target Start/End: Original strand, 11406443 - 11406695
Alignment:
| Q |
19 |
ctataaacaccaattctttgaggagaaaacaacattattaggatattaatgtaccaatctatgacactaatgatgatgcaatgaacttctggtaatttca |
118 |
Q |
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| T |
11406443 |
ctataaacaccaattctttgaggagaaaacaacattattaggatattaatgtaccaatctatgacactaatgatgatgtaatgaacttctggtaatttca |
11406542 |
T |
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| Q |
119 |
gaattttcattccaatgtatagcttctctgaattgagaggaacactttagagaataaaatatgaaattataacattgattggaaagtcatgatcattaat |
218 |
Q |
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| T |
11406543 |
gaattttcattccaatgtataggttctctgaattgagaggaacactttagagaataaaatatgaaattataacattgattagaaagtcatgatcattaat |
11406642 |
T |
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| Q |
219 |
attttaccaattccacaacatgtacatactttatcacaaactcaagcttcaac |
271 |
Q |
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| T |
11406643 |
attttaccaattccacaatatgtacatactttatcacaaactcaagcttcaac |
11406695 |
T |
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