View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8491_low_36 (Length: 253)
Name: NF8491_low_36
Description: NF8491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8491_low_36 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 7774570 - 7774333
Alignment:
| Q |
1 |
tttaaggaattgtccaaatttgttcaaactacaccactcattgtcaatcccgtttcaacaggtgcagtttctattcaaggtgttccttcagttgaatatt |
100 |
Q |
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| T |
7774570 |
tttaaggaattgtccaaatttgttcaaactacaccgctcattgtcaatcccgtttcaacaggtgcagtttctgttcaaggtgttccttcagttgaatatt |
7774471 |
T |
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| Q |
101 |
ttattgatgtcaaagaggtgaaggttgatggcaatgttttgaacttaaagccttctttattgtctattgacaaaaagggaaatggtggcaccaaaattag |
200 |
Q |
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| T |
7774470 |
ttattgatgtcaaagaggtgaaggttgatggcaatgttttgaacttaaagccttctttattgtctattgacaaaaagggaaatggtggcaccaaaattag |
7774371 |
T |
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| Q |
201 |
taccataattcctttcactgaattgcaaagttctgtat |
238 |
Q |
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| T |
7774370 |
taccataattcctttcactgaattgcaaagttctgtat |
7774333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 7 - 236
Target Start/End: Complemental strand, 7767237 - 7767008
Alignment:
| Q |
7 |
gaattgtccaaatttgttcaaactacaccactcattgtcaatcccgtttcaacaggtgcagtttctattcaaggtgttccttcagttgaatattttattg |
106 |
Q |
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||||||||||||||||||||||| || ||||||||||| ||||| || |||||||||| ||||| ||||||||| | ||||| |||||||||| |||| |
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| T |
7767237 |
gaattgtccaaatttgttcaaaccacgccactcattgttaatcctgtcccaacaggtgctatttctgttcaaggtgcttcttcaattgaatatttcattg |
7767138 |
T |
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| Q |
107 |
atgtcaaagaggtgaaggttgatggcaatgttttgaacttaaagccttctttattgtctattgacaaaaagggaaatggtggcaccaaaattagtaccat |
206 |
Q |
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| T |
7767137 |
atgtgaaagctgttaagattgatggcaatgttttgaacataaagccttctttgttgtctattgacaaaaagggaaacggtggcaccaaaattagtacaat |
7767038 |
T |
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| Q |
207 |
aattcctttcactgaattgcaaagttctgt |
236 |
Q |
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| T |
7767037 |
tagtcctttcactgaattgcaaacttctgt |
7767008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 2 - 236
Target Start/End: Original strand, 11512 - 11746
Alignment:
| Q |
2 |
ttaaggaattgtccaaatttgttcaaactacaccactcattgtcaatcccgtttcaacaggtgcagtttctattcaaggtgttccttcagttgaatattt |
101 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||| ||||||||| |
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| T |
11512 |
ttaaggaattgtccaaatttgttcaaaccacaccactcattgtcaatcctatttcaacaggtgctgtttttattcaaggtgttccttcaaatgaatattt |
11611 |
T |
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| Q |
102 |
tattgatgtcaaagaggtgaaggttgatggcaatgttttgaacttaaagccttctttattgtctattgacaaaaagggaaatggtggcaccaaaattagt |
201 |
Q |
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| T |
11612 |
cattgatttgaaagctattaagattgatggtaatgttttgaacttaaagccttctttgttttctattgacaaaaagggaaatggtggcaccaaaattagt |
11711 |
T |
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| Q |
202 |
accataattcctttcactgaattgcaaagttctgt |
236 |
Q |
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||| | | |||||||||| ||||||||| |||||| |
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| T |
11712 |
accttgagtcctttcactaaattgcaaaattctgt |
11746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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