View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8491_low_37 (Length: 252)
Name: NF8491_low_37
Description: NF8491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8491_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 38851181 - 38851419
Alignment:
| Q |
1 |
ctagaacctcaagctttggagcgtaactatagggaaatataagataattaattatgtttgagaaagaaactttctttgctttactttgacctcaattgta |
100 |
Q |
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| T |
38851181 |
ctagaacctcaagctttggagcgtaactatagggaaatataagataatta----tggttgagaaagagactttatttgctttactttgaccttaattgta |
38851276 |
T |
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| Q |
101 |
aaaatacttcagttgaagttattaattcattttttctaataagattatggtgtagttaattatttgaagttttgaaccaagagaatacatatatattgtg |
200 |
Q |
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| T |
38851277 |
aaaatacttcagttgaagttattaattcattttttctaataagattatggtgtagttaattatttgaagttttgaaccaagagaatacatatatattgtg |
38851376 |
T |
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| Q |
201 |
ttgagcaaagaatgaaagaaaac-aaaaaactaattagtataa |
242 |
Q |
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| T |
38851377 |
ttgagcaaagaatgaaagaaaacaaaaaaactaaatagtataa |
38851419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 38840713 - 38840622
Alignment:
| Q |
11 |
aagctttggagcgtaactatagggaaatataagataattaattatgtttgagaaagaaactttctttgctttactttgacctcaattgtaaaaata |
106 |
Q |
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| T |
38840713 |
aagctttggaacgtaactatagggaaatataagataatta----tggttgagcaagaaactttctttgctttactttgatctcaaatgtagaaata |
38840622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 107
Target Start/End: Complemental strand, 38861178 - 38861137
Alignment:
| Q |
66 |
gaaactttctttgctttactttgacctcaattgtaaaaatac |
107 |
Q |
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| T |
38861178 |
gaaactttctttgctttactttgacctcaaatgtaaaaatac |
38861137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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