View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8491_low_40 (Length: 249)
Name: NF8491_low_40
Description: NF8491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8491_low_40 |
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| [»] chr2 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 7774864 - 7774621
Alignment:
| Q |
6 |
tttggtgttggccttggtgaagatttcattttcatttcgcaacaaaaagtttctggcttactctcaagttgcattgatattgatagacttccttcattca |
105 |
Q |
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| T |
7774864 |
tttggtggtgaccttggtgaagatttcattttcatttcacaacaaaaagtttctggcttgctctcaagttgcattgacattgatagacttccatcattca |
7774765 |
T |
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| Q |
106 |
ccggagaggattcaccactcaatggcttgccaaaaaataccaaaggaattattggtctttcaagatcaaacctttcactaccaacacaacttgcattgaa |
205 |
Q |
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| T |
7774764 |
ctggagaggattcaccactcaacggcttaccaaaaatcactaaaggaattattggtctttcaagatcaaacctttcactaccaacacaacttgcattgaa |
7774665 |
T |
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| Q |
206 |
aaacaagcttccacccaaattctctctttgtttaccttcttcaa |
249 |
Q |
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| T |
7774664 |
aaacaagcttccacacaaattctctctttgtttaccttcttcaa |
7774621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 7767537 - 7767294
Alignment:
| Q |
6 |
tttggtgttggccttggtgaagatttcattttcatttcgcaacaaaaagtttctggcttactctcaagttgcattgatattgatagacttccttcattca |
105 |
Q |
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| T |
7767537 |
tttggtggtggccttggtgaagatttcattttcatttctcaacaaaaagtttctggcttactctcaagttgcattgatattgatggattttcatctaccg |
7767438 |
T |
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| Q |
106 |
ccggagaggattcaccactcaatggcttgccaaaaaataccaaaggaattattggtctttcaagatcaaacctttcactaccaacacaacttgcattgaa |
205 |
Q |
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| T |
7767437 |
ctgaggatgattcaccactcaatggcttaccaaaaaacactaaaggaatttttggtcttgcaagatcaaacctttcactaccaactcaacttgcattgaa |
7767338 |
T |
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| Q |
206 |
aaacaagcttccacccaaattctctctttgtttaccttcttcaa |
249 |
Q |
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| T |
7767337 |
aaacaagcttcaaccaaaattctctctttgtttgccttcttcaa |
7767294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 21268528 - 21268296
Alignment:
| Q |
17 |
ccttggtgaagatttcattttcatttcgcaacaaaaagtttctggcttactctcaagttgcattgatattgatagacttccttcattcaccggagaggat |
116 |
Q |
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| T |
21268528 |
ccttgatgaagatttgattttcatttcacaacaaaaagtttatggcttgctctcttgttgcattcacaggagtagacttccatcattaactggcagtgat |
21268429 |
T |
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| Q |
117 |
tcaccactcaatggcttgccaaaaaataccaaaggaattattggtctttcaagatcaaacctttcactaccaacacaacttgcattgaaaaacaagcttc |
216 |
Q |
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||| | |||||||||| |||||||| |||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
21268428 |
tcataattcaatggcttaccaaaaaacaccaaaggaattattgttcttgcaagatcaaacctttcactaccaactcaacttgcattgaaaaacaaggttc |
21268329 |
T |
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| Q |
217 |
cacccaaattctctctttgtttaccttcttcaa |
249 |
Q |
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| T |
21268328 |
aacctagattctctctttgtttgccttcttcaa |
21268296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 6 - 249
Target Start/End: Original strand, 54302629 - 54302869
Alignment:
| Q |
6 |
tttggtgttggccttggtgaagatttcattttcatttcgcaacaaaaagtttctggcttactctcaagttgcattgatattgatagacttccttcattca |
105 |
Q |
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||||||||| ||||| ||||||||| ||||||||||| |||||||||||||||||||| || |||||||| | | ||||||| | ||||| | |
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| T |
54302629 |
tttggtgttaaccttgatgaagatttaattttcatttcacaacaaaaagtttctggcttgctt----gttgcatttacaggagtagactttcgtcattaa |
54302724 |
T |
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| Q |
106 |
c-cggagaggattcaccactcaatggcttgccaaaaaataccaaaggaattattggtctttcaagatcaaacctttcactaccaacacaacttgcattga |
204 |
Q |
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| T |
54302725 |
ctcgcagcg-attcgtcattcaatggcttaccagaaaacaccaaaggaattattgttcttgtaagatcaaacatattactaccaacacaacttgcattga |
54302823 |
T |
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| Q |
205 |
aaaacaagcttccacccaaatt-ctctctttgtttaccttcttcaa |
249 |
Q |
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| T |
54302824 |
aaaacaagcttccacctaaattcctctctttgtttgccttcttcaa |
54302869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 45 - 249
Target Start/End: Original strand, 11263 - 11463
Alignment:
| Q |
45 |
caacaaaaagtttctggcttactctcaagttgcattgatattgatagacttccttcattcaccggagaggattcaccactcaatggcttgccaaaaaata |
144 |
Q |
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||||||||||||| |||||| || || | ||| ||||| |||||| | |||| |||||||||| | |||||||||||||||||||| || ||||||| |
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| T |
11263 |
caacaaaaagtttttggcttgctttctacttgtattgacattgatggttttccgtcattcaccgacaatgattcaccactcaatggcttacctaaaaata |
11362 |
T |
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| Q |
145 |
ccaaaggaattattggtctttcaagatcaaacctttcactaccaacacaacttgcattgaaaaacaagcttccacccaaattctctctttgtttaccttc |
244 |
Q |
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| T |
11363 |
ccaaaggaattattggtcttgcaagatcaaaatattcact----acacaacttgccttgagaaacaagcttccacctaaattctctctttgtttaccttc |
11458 |
T |
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| Q |
245 |
ttcaa |
249 |
Q |
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|||| |
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| T |
11459 |
ctcaa |
11463 |
T |
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