View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8491_low_41 (Length: 248)

Name: NF8491_low_41
Description: NF8491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8491_low_41
NF8491_low_41
[»] chr1 (28 HSPs)
chr1 (1-162)||(35919151-35919312)
chr1 (165-230)||(35919033-35919098)
chr1 (1-48)||(1486698-1486745)
chr1 (3-87)||(2218264-2218347)
chr1 (1-42)||(5944306-5944347)
chr1 (1-43)||(25361909-25361951)
chr1 (1-43)||(44482253-44482295)
chr1 (1-43)||(47989520-47989562)
chr1 (1-41)||(7918207-7918247)
chr1 (1-41)||(24577182-24577222)
chr1 (4-48)||(34712372-34712416)
chr1 (1-40)||(25272505-25272544)
chr1 (1-40)||(34371736-34371775)
chr1 (4-42)||(5376495-5376533)
chr1 (4-42)||(6612166-6612204)
chr1 (1-47)||(20157340-20157386)
chr1 (1-43)||(31694704-31694746)
chr1 (1-42)||(113322-113363)
chr1 (1-42)||(9629895-9629936)
chr1 (49-85)||(1486646-1486682)
chr1 (1-41)||(1704988-1705028)
chr1 (51-87)||(9630561-9630597)
chr1 (1-41)||(9828067-9828107)
chr1 (1-37)||(18337352-18337388)
chr1 (1-37)||(30749863-30749899)
chr1 (1-37)||(30771314-30771350)
chr1 (50-86)||(45534131-45534167)
chr1 (1-37)||(51410048-51410084)
[»] chr6 (35 HSPs)
chr6 (1-87)||(9027201-9027286)
chr6 (1-84)||(9025448-9025530)
chr6 (1-91)||(9911478-9911564)
chr6 (1-87)||(8805524-8805608)
chr6 (1-87)||(7086818-7086904)
chr6 (4-48)||(12696350-12696394)
chr6 (1-48)||(10770663-10770710)
chr6 (1-43)||(16766720-16766762)
chr6 (51-88)||(3209482-3209519)
chr6 (49-85)||(26178620-26178656)
chr6 (1-48)||(3398641-3398688)
chr6 (1-48)||(17327644-17327691)
chr6 (51-86)||(17341622-17341657)
chr6 (4-63)||(20370420-20370478)
chr6 (1-40)||(31384943-31384982)
chr6 (1-43)||(8365513-8365555)
chr6 (1-43)||(9107364-9107406)
chr6 (1-43)||(9522914-9522956)
chr6 (1-43)||(26562712-26562754)
chr6 (6-40)||(34197139-34197173)
chr6 (1-46)||(2117099-2117143)
chr6 (50-87)||(10339054-10339091)
chr6 (1-30)||(17341671-17341700)
chr6 (5-42)||(20576628-20576665)
chr6 (1-37)||(1700375-1700411)
chr6 (1-37)||(7027265-7027301)
chr6 (1-37)||(7265593-7265629)
chr6 (4-40)||(7973680-7973716)
chr6 (4-48)||(9024165-9024209)
chr6 (4-44)||(16111750-16111790)
chr6 (1-37)||(19040375-19040411)
chr6 (1-37)||(28152121-28152157)
chr6 (1-86)||(31959182-31959268)
chr6 (1-29)||(32511674-32511702)
chr6 (1-37)||(34595157-34595193)
[»] chr8 (15 HSPs)
chr8 (1-88)||(25566864-25566950)
chr8 (49-87)||(24858097-24858135)
chr8 (1-93)||(4948675-4948760)
chr8 (1-93)||(13436904-13437000)
chr8 (1-37)||(30077387-30077423)
chr8 (1-40)||(11927083-11927122)
chr8 (1-40)||(15816126-15816165)
chr8 (1-43)||(24362196-24362238)
chr8 (1-38)||(26902174-26902211)
chr8 (1-41)||(2572052-2572092)
chr8 (1-37)||(3025574-3025610)
chr8 (1-37)||(4786338-4786374)
chr8 (1-37)||(8847279-8847315)
chr8 (4-40)||(16867202-16867238)
chr8 (51-87)||(36450694-36450730)
[»] scaffold0020 (1 HSPs)
scaffold0020 (1-87)||(135263-135348)
[»] scaffold0171 (2 HSPs)
scaffold0171 (1-48)||(23443-23490)
scaffold0171 (1-43)||(23534-23576)
[»] chr7 (28 HSPs)
chr7 (6-86)||(11272531-11272617)
chr7 (1-74)||(18215150-18215222)
chr7 (1-87)||(35861987-35862070)
chr7 (1-48)||(5409825-5409872)
chr7 (1-48)||(32094009-32094056)
chr7 (1-47)||(5548699-5548745)
chr7 (1-47)||(9778523-9778569)
chr7 (1-43)||(18039022-18039064)
chr7 (1-43)||(24339665-24339707)
chr7 (4-87)||(35749922-35750006)
chr7 (1-42)||(22602705-22602746)
chr7 (1-48)||(11890908-11890955)
chr7 (4-47)||(13770717-13770760)
chr7 (36-87)||(32093954-32094005)
chr7 (1-47)||(16341519-16341565)
chr7 (1-43)||(21560526-21560568)
chr7 (49-87)||(24105759-24105797)
chr7 (1-43)||(26033455-26033497)
chr7 (1-43)||(32308143-32308185)
chr7 (49-87)||(38134335-38134373)
chr7 (49-91)||(38804485-38804527)
chr7 (1-42)||(2334273-2334314)
chr7 (4-41)||(18013070-18013107)
chr7 (1-38)||(19992024-19992061)
chr7 (4-41)||(27945067-27945104)
chr7 (1-37)||(15680832-15680868)
chr7 (36-88)||(21568560-21568611)
chr7 (1-41)||(27229307-27229347)
[»] chr3 (22 HSPs)
chr3 (1-48)||(25948876-25948923)
chr3 (1-88)||(11610544-11610629)
chr3 (1-43)||(14209136-14209178)
chr3 (13-86)||(25211574-25211648)
chr3 (1-45)||(49651778-49651822)
chr3 (1-40)||(14216915-14216954)
chr3 (1-40)||(14223044-14223083)
chr3 (1-48)||(27505269-27505316)
chr3 (36-87)||(40052381-40052431)
chr3 (1-39)||(28918024-28918062)
chr3 (1-87)||(32429331-32429416)
chr3 (6-43)||(8039829-8039866)
chr3 (50-87)||(21211376-21211413)
chr3 (2-43)||(22774064-22774105)
chr3 (1-85)||(25775532-25775624)
chr3 (1-37)||(7928473-7928509)
chr3 (1-37)||(8383280-8383316)
chr3 (1-41)||(14747585-14747625)
chr3 (1-41)||(16789035-16789075)
chr3 (1-41)||(34185119-34185159)
chr3 (1-48)||(34307769-34307816)
chr3 (1-37)||(40993335-40993371)
[»] chr2 (19 HSPs)
chr2 (1-87)||(33153447-33153535)
chr2 (1-87)||(44635521-44635612)
chr2 (4-43)||(12668417-12668456)
chr2 (1-42)||(32749820-32749861)
chr2 (4-40)||(36756341-36756377)
chr2 (1-48)||(974770-974817)
chr2 (51-93)||(10535679-10535721)
chr2 (1-43)||(23058436-23058478)
chr2 (1-43)||(34784976-34785018)
chr2 (49-90)||(11223790-11223831)
chr2 (1-42)||(30717525-30717566)
chr2 (6-43)||(35056896-35056933)
chr2 (1-37)||(2438719-2438755)
chr2 (1-37)||(5367215-5367251)
chr2 (1-37)||(18421986-18422022)
chr2 (1-41)||(18622629-18622669)
chr2 (1-37)||(19536397-19536433)
chr2 (1-37)||(20242727-20242763)
chr2 (1-37)||(28596492-28596528)
[»] chr5 (20 HSPs)
chr5 (1-87)||(2436945-2437030)
chr5 (1-43)||(25888287-25888329)
chr5 (1-43)||(39698564-39698606)
chr5 (1-87)||(6471842-6471925)
chr5 (1-86)||(13287354-13287435)
chr5 (1-87)||(6247645-6247729)
chr5 (4-43)||(21542056-21542095)
chr5 (36-87)||(27932304-27932354)
chr5 (1-48)||(31084346-31084393)
chr5 (1-43)||(7677728-7677770)
chr5 (1-87)||(15884011-15884096)
chr5 (2-43)||(21351899-21351940)
chr5 (1-87)||(38464313-38464400)
chr5 (1-41)||(3966526-3966566)
chr5 (51-87)||(11596398-11596434)
chr5 (49-89)||(19820326-19820366)
chr5 (1-37)||(21191056-21191092)
chr5 (1-37)||(28588674-28588710)
chr5 (1-41)||(41091253-41091293)
chr5 (1-37)||(43564904-43564940)
[»] scaffold0008 (1 HSPs)
scaffold0008 (3-43)||(263366-263406)
[»] scaffold0223 (1 HSPs)
scaffold0223 (1-72)||(20195-20261)
[»] chr4 (21 HSPs)
chr4 (5-48)||(3947755-3947798)
chr4 (1-43)||(30982872-30982914)
chr4 (50-87)||(16184913-16184950)
chr4 (4-87)||(20633508-20633590)
chr4 (1-37)||(54580023-54580059)
chr4 (1-48)||(12895105-12895152)
chr4 (1-43)||(4383390-4383432)
chr4 (49-87)||(12895214-12895252)
chr4 (1-43)||(22234884-22234926)
chr4 (1-43)||(28084545-28084587)
chr4 (50-88)||(29205550-29205588)
chr4 (1-87)||(11596297-11596388)
chr4 (1-42)||(19312358-19312399)
chr4 (1-37)||(8423718-8423754)
chr4 (1-37)||(12797338-12797374)
chr4 (2-30)||(14126118-14126146)
chr4 (1-37)||(28964248-28964284)
chr4 (52-88)||(30621752-30621788)
chr4 (4-88)||(37203290-37203372)
chr4 (1-37)||(42640552-42640588)
chr4 (1-37)||(49431049-49431085)
[»] scaffold0044 (1 HSPs)
scaffold0044 (1-43)||(53203-53245)
[»] scaffold0236 (1 HSPs)
scaffold0236 (1-40)||(25765-25804)
[»] scaffold0136 (1 HSPs)
scaffold0136 (1-40)||(3846-3885)
[»] scaffold0025 (1 HSPs)
scaffold0025 (1-40)||(23793-23832)
[»] scaffold0227 (1 HSPs)
scaffold0227 (50-88)||(15053-15091)
[»] scaffold0123 (1 HSPs)
scaffold0123 (1-43)||(44519-44561)
[»] scaffold0361 (1 HSPs)
scaffold0361 (52-93)||(14611-14652)
[»] scaffold0050 (1 HSPs)
scaffold0050 (4-37)||(70304-70337)
[»] scaffold0049 (1 HSPs)
scaffold0049 (6-43)||(56950-56987)
[»] scaffold0122 (1 HSPs)
scaffold0122 (1-41)||(8689-8729)


Alignment Details
Target: chr1 (Bit Score: 150; Significance: 2e-79; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 35919312 - 35919151
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcggacacgcgggacacgcctaatcggaggagtgtttgtgcttcatagaatttactacatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||    
T  35919312 atcacataattcagtgtaattataagtgtccgtgtcgtgtcggacacgcgggacacgcctaatcggaggactgtccgtgcttcatagaatttactacatt 35919213  T
Q  101 aacaaatcctcttctttacaaaattctcaaatttatccaacagagattgacaaaaacagaac 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35919212 aacaaatcctcttctttacaaaattctcaaatttatccaacagagattgacaaaaacagaac 35919151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 165 - 230
Target Start/End: Complemental strand, 35919098 - 35919033
Alignment:
Q  165 ttaatccgaacaggataaacaaagtgacattgttcaatacaaaagtaagagccactgaacccaaag 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35919098 ttaatccgaacaggataaacaaagtgacattgttcaatacaaaagtaagagccactgaacccaaag 35919033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 1486745 - 1486698
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcggacacg 48  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||    
T  1486745 atcacataattcagtgtaattataagtgtcggtgtcgtgtcggacacg 1486698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 2218264 - 2218347
Alignment:
Q  3 cacataattcagtgtaattataagtgtccgtgtcgtgtcggacacgcgggacacgcctaatcggaggagtgtttgtgcttcatag 87  Q
    ||||||||| |||||||||| ||||||| |||||||||| |||||  || |||||||||||| |||||||||  |||||||||||    
T  2218264 cacataatttagtgtaattacaagtgtcggtgtcgtgtccgacactagg-acacgcctaatctgaggagtgtccgtgcttcatag 2218347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 5944306 - 5944347
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcg 42  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  5944306 atcacataattcagtgtaattataagtgtcggtgtcgtgtcg 5944347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 25361909 - 25361951
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcgg 43  Q
    |||||||||||||||||||||||| ||||| ||||||||||||    
T  25361909 atcacataattcagtgtaattatatgtgtcagtgtcgtgtcgg 25361951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 44482253 - 44482295
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcgg 43  Q
    |||||||||||||||||||||||| ||||| ||||||||||||    
T  44482253 atcacataattcagtgtaattatatgtgtcggtgtcgtgtcgg 44482295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 47989520 - 47989562
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcgg 43  Q
    |||||||||||||||||||||| ||||||| ||||||||||||    
T  47989520 atcacataattcagtgtaattacaagtgtcggtgtcgtgtcgg 47989562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 7918247 - 7918207
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtc 41  Q
    |||||||||||||||||||||||| ||||| ||||||||||    
T  7918247 atcacataattcagtgtaattatatgtgtcagtgtcgtgtc 7918207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 24577222 - 24577182
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtc 41  Q
    |||||||||||||||||||||| ||||||| ||||||||||    
T  24577222 atcacataattcagtgtaattacaagtgtcggtgtcgtgtc 24577182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 34712416 - 34712372
Alignment:
Q  4 acataattcagtgtaattataagtgtccgtgtcgtgtcggacacg 48  Q
    |||||||| |||||||||||| ||||| |||||||||||||||||    
T  34712416 acataatttagtgtaattatatgtgtcagtgtcgtgtcggacacg 34712372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 25272505 - 25272544
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgt 40  Q
    ||||||||||| |||||||||||||||||| |||||||||    
T  25272505 atcacataatttagtgtaattataagtgtcggtgtcgtgt 25272544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 34371736 - 34371775
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgt 40  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  34371736 atcacataattcagtgtaattatatgtgtcggtgtcgtgt 34371775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 5376533 - 5376495
Alignment:
Q  4 acataattcagtgtaattataagtgtccgtgtcgtgtcg 42  Q
    ||||||||||||||||||| ||||||| |||||||||||    
T  5376533 acataattcagtgtaattaaaagtgtcggtgtcgtgtcg 5376495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 6612204 - 6612166
Alignment:
Q  4 acataattcagtgtaattataagtgtccgtgtcgtgtcg 42  Q
    ||||||||||||||||||| ||||||| |||||||||||    
T  6612204 acataattcagtgtaattacaagtgtcggtgtcgtgtcg 6612166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 20157386 - 20157340
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcggacac 47  Q
    |||||||||||||||||||| ||| ||||| |||||||||| |||||    
T  20157386 atcacataattcagtgtaatcatatgtgtcggtgtcgtgtccgacac 20157340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 31694746 - 31694704
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcgg 43  Q
    ||||||||||||||| |||||| ||||||| ||||||||||||    
T  31694746 atcacataattcagtataattacaagtgtcggtgtcgtgtcgg 31694704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 113322 - 113363
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcg 42  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  113322 atcacataattcagtgtaattacaagtgtaggtgtcgtgtcg 113363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 9629936 - 9629895
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcg 42  Q
    |||| |||||||||||| |||||||||||| |||||||||||    
T  9629936 atcatataattcagtgtgattataagtgtcggtgtcgtgtcg 9629895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 1486682 - 1486646
Alignment:
Q  49 cgggacacgcctaatcggaggagtgtttgtgcttcat 85  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  1486682 cgggacacgcctaatccgaggagtgtctgtgcttcat 1486646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 1705028 - 1704988
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtc 41  Q
    |||||||||||||| ||||||| ||||||| ||||||||||    
T  1705028 atcacataattcagggtaattacaagtgtcggtgtcgtgtc 1704988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 9630597 - 9630561
Alignment:
Q  51 ggacacgcctaatcggaggagtgtttgtgcttcatag 87  Q
    |||||||||||||| |||||||||| |||||||||||    
T  9630597 ggacacgcctaatccgaggagtgttcgtgcttcatag 9630561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 9828067 - 9828107
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtc 41  Q
    ||||||||||||||||||||| || ||||| ||||||||||    
T  9828067 atcacataattcagtgtaattttatgtgtcggtgtcgtgtc 9828107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 18337352 - 18337388
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcg 37  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  18337352 atcacataattcagtgtaattacaagtgtcggtgtcg 18337388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 30749863 - 30749899
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcg 37  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  30749863 atcacataattcagtgtaattatatgtgtcggtgtcg 30749899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 30771314 - 30771350
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcg 37  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  30771314 atcacataattcagtgtaattatatgtgtcggtgtcg 30771350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 45534167 - 45534131
Alignment:
Q  50 gggacacgcctaatcggaggagtgtttgtgcttcata 86  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  45534167 gggacacgccttatccgaggagtgtttgtgcttcata 45534131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 51410048 - 51410084
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcg 37  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  51410048 atcacataattcagtgtaattacaagtgtcggtgtcg 51410084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 9027201 - 9027286
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcggacacgcgggacacgcctaatcggaggagtgtttgtgcttcatag 87  Q
    |||||||||||| ||||||||||| ||||| |||||||||| ||||| ||||||||| ||||||  |||||||||||||||||||||    
T  9027201 atcacataattccgtgtaattatatgtgtcggtgtcgtgtccgacac-cgggacacggctaatccaaggagtgtttgtgcttcatag 9027286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 9025530 - 9025448
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcggacacgcgggacacgcctaatcggaggagtgtttgtgcttca 84  Q
    |||||||||||||||||||||||| ||||| |||||||||| ||||| |||||||||||||||| ||| |||||  ||||||||    
T  9025530 atcacataattcagtgtaattatatgtgtcggtgtcgtgtccgacac-cgggacacgcctaatccgagaagtgtccgtgcttca 9025448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 9911564 - 9911478
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcggacacgcgggacacgcctaatcggaggagtgtttgtgcttcatagaatt 91  Q
    |||||||||||||||||||||| ||||||| |||||||||    ||  | |||||||||||||| ||||||||||  ||||||||||||||    
T  9911564 atcacataattcagtgtaattacaagtgtcggtgtcgtgt----caaccaggacacgcctaatccgaggagtgttcatgcttcatagaatt 9911478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 8805608 - 8805524
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcggacacgcgggacacgcctaatcggaggagtgtttgtgcttcatag 87  Q
    ||||||||||| |||||||||||  ||||| |||| ||||| |||||| |||||| |||||||| |||||||||  |||||||||||    
T  8805608 atcacataatttagtgtaattat--gtgtcggtgtagtgtcagacacgtgggacatgcctaatccgaggagtgtccgtgcttcatag 8805524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 7086818 - 7086904
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcggacacgcgggacacgcctaatcggaggagtgtttgtgcttcatag 87  Q
    ||||||||||| |||||||||||| ||||| |||| ||||| |||||| | |||| |||||||| ||||||| |  |||||||||||    
T  7086818 atcacataatttagtgtaattatatgtgtcggtgtagtgtcagacacgtgagacatgcctaatccgaggagtttccgtgcttcatag 7086904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 12696350 - 12696394
Alignment:
Q  4 acataattcagtgtaattataagtgtccgtgtcgtgtcggacacg 48  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||    
T  12696350 acataattcagtgtaattacaagtgtcagtgtcgtgtcggacacg 12696394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 10770710 - 10770663
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcggacacg 48  Q
    |||||||||||||||||||||| ||||||| |||||||||| ||||||    
T  10770710 atcacataattcagtgtaattacaagtgtcggtgtcgtgtcagacacg 10770663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 16766720 - 16766762
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcgg 43  Q
    |||||||||||||||||||||| ||||||| ||||||||||||    
T  16766720 atcacataattcagtgtaattacaagtgtcggtgtcgtgtcgg 16766762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 3209482 - 3209519
Alignment:
Q  51 ggacacgcctaatcggaggagtgtttgtgcttcataga 88  Q
    |||||||||||||| |||||||||||||||||||||||    
T  3209482 ggacacgcctaatccgaggagtgtttgtgcttcataga 3209519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 26178656 - 26178620
Alignment:
Q  49 cgggacacgcctaatcggaggagtgtttgtgcttcat 85  Q
    |||||||||||||||||||||||||| ||||||||||    
T  26178656 cgggacacgcctaatcggaggagtgtctgtgcttcat 26178620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 3398641 - 3398688
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcggacacg 48  Q
    |||| |||||||||||||||||||||| || ||||||||| |||||||    
T  3398641 atcatataattcagtgtaattataagtatcggtgtcgtgttggacacg 3398688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 17327691 - 17327644
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcggacacg 48  Q
    ||||||||||| ||||||| |||| ||||| |||||||||||||||||    
T  17327691 atcacataatttagtgtaactatatgtgtcagtgtcgtgtcggacacg 17327644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 86
Target Start/End: Complemental strand, 17341657 - 17341622
Alignment:
Q  51 ggacacgcctaatcggaggagtgtttgtgcttcata 86  Q
    |||||||||||||| |||||||||||||||||||||    
T  17341657 ggacacgcctaatccgaggagtgtttgtgcttcata 17341622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 20370478 - 20370420
Alignment:
Q  4 acataattcagtgtaattataagtgtccgtgtcgtgtcggacacgcgggacacgcctaat 63  Q
    |||||||||| |||||||||||||||  ||||| |||||||||| |||||||||| ||||    
T  20370478 acataattcactgtaattataagtgtgagtgtcatgtcggacac-cgggacacgcttaat 20370420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 31384943 - 31384982
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgt 40  Q
    |||||||||||||||||||||| ||||||| |||||||||    
T  31384943 atcacataattcagtgtaattacaagtgtcagtgtcgtgt 31384982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 8365555 - 8365513
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcgg 43  Q
    |||||||||||| ||||||||| ||||||| ||||||||||||    
T  8365555 atcacataattcggtgtaattacaagtgtcggtgtcgtgtcgg 8365513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 9107406 - 9107364
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcgg 43  Q
    |||||| ||||||||||||||| ||||||| ||||||||||||    
T  9107406 atcacaaaattcagtgtaattacaagtgtcggtgtcgtgtcgg 9107364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 9522914 - 9522956
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcgg 43  Q
    |||||||||||||||||||||| ||||||| |||| |||||||    
T  9522914 atcacataattcagtgtaattacaagtgtcggtgttgtgtcgg 9522956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 26562712 - 26562754
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcgg 43  Q
    |||||||||||||||||||||||| |||||  |||||||||||    
T  26562712 atcacataattcagtgtaattatatgtgtcgatgtcgtgtcgg 26562754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 34197139 - 34197173
Alignment:
Q  6 ataattcagtgtaattataagtgtccgtgtcgtgt 40  Q
    ||||||||||||||||||||||||| |||||||||    
T  34197139 ataattcagtgtaattataagtgtcggtgtcgtgt 34197173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 2117099 - 2117143
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcggaca 46  Q
    ||||||||||||| || |||||||||||| ||||||||||||||||    
T  2117099 atcacataattcaatgcaattataagtgt-cgtgtcgtgtcggaca 2117143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 87
Target Start/End: Complemental strand, 10339091 - 10339054
Alignment:
Q  50 gggacacgcctaatcggaggagtgtttgtgcttcatag 87  Q
    |||||||||||||||||||||||||  |||||||||||    
T  10339091 gggacacgcctaatcggaggagtgtccgtgcttcatag 10339054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 17341700 - 17341671
Alignment:
Q  1 atcacataattcagtgtaattataagtgtc 30  Q
    ||||||||||||||||||||||||||||||    
T  17341700 atcacataattcagtgtaattataagtgtc 17341671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 42
Target Start/End: Complemental strand, 20576665 - 20576628
Alignment:
Q  5 cataattcagtgtaattataagtgtccgtgtcgtgtcg 42  Q
    |||||||||||||||||||||||||  |||||||||||    
T  20576665 cataattcagtgtaattataagtgttggtgtcgtgtcg 20576628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 1700375 - 1700411
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcg 37  Q
    |||||||| ||||||||||||||||||||| ||||||    
T  1700375 atcacatatttcagtgtaattataagtgtcggtgtcg 1700411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 7027265 - 7027301
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcg 37  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  7027265 atcacataattcagtgtaattatatgtgtcggtgtcg 7027301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 7265629 - 7265593
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcg 37  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  7265629 atcacataattcagtgtaattatatgtgtcggtgtcg 7265593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 7973680 - 7973716
Alignment:
Q  4 acataattcagtgtaattataagtgtccgtgtcgtgt 40  Q
    |||||||| |||||||||||||||||| |||||||||    
T  7973680 acataattaagtgtaattataagtgtcggtgtcgtgt 7973716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 9024209 - 9024165
Alignment:
Q  4 acataattcagtgtaattataagtgtccgtgtcgtgtcggacacg 48  Q
    |||||||||| |||||| ||| ||||| |||||||||||||||||    
T  9024209 acataattcaatgtaatcatatgtgtcagtgtcgtgtcggacacg 9024165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 16111790 - 16111750
Alignment:
Q  4 acataattcagtgtaattataagtgtccgtgtcgtgtcgga 44  Q
    |||||||| |||||||||||| ||||| |||||||||||||    
T  16111790 acataatttagtgtaattataggtgtcagtgtcgtgtcgga 16111750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 19040375 - 19040411
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcg 37  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  19040375 atcacataattcagtgtaattatatgtgtctgtgtcg 19040411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 28152121 - 28152157
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcg 37  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  28152121 atcacataattcagtgtaattacaagtgtcggtgtcg 28152157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 31959182 - 31959268
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtc--gtgtcggacacgcgggacacgcctaatcggaggagtgtttgtgcttcata 86  Q
    |||||||||| ||||||||||| ||||||| | | |  ||||| ||||| |||||||| ||||||| |||||||||  ||||||||||    
T  31959182 atcacataatgcagtgtaattacaagtgtcggcgacatgtgtccgacac-cgggacacacctaatccgaggagtgtccgtgcttcata 31959268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 32511702 - 32511674
Alignment:
Q  1 atcacataattcagtgtaattataagtgt 29  Q
    |||||||||||||||||||||||||||||    
T  32511702 atcacataattcagtgtaattataagtgt 32511674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 34595157 - 34595193
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcg 37  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  34595157 atcacataattcagtgtaattacaagtgtcggtgtcg 34595193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 25566864 - 25566950
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcggacacgcgggacacgcctaatcggaggagtgtttgtgcttcataga 88  Q
    |||||||||||||||||||||| ||||||| ||||||||| ||   | |||||||||||||||| ||||||||| |||||||||||||    
T  25566864 atcacataattcagtgtaattacaagtgtcggtgtcgtgttggtgtc-cgggacacgcctaatccgaggagtgtctgtgcttcataga 25566950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 87
Target Start/End: Original strand, 24858097 - 24858135
Alignment:
Q  49 cgggacacgcctaatcggaggagtgtttgtgcttcatag 87  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  24858097 cgggacacgcctaatcagaggagtgtttgtgcttcatag 24858135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 4948675 - 4948760
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcggacacgcgggacacgcctaatcggaggagtgtttgtgcttcatagaattta 93  Q
    |||||||||||||||||||||| |||||||      ||||||||||  || |||||||||||||| | ||||||  |||||||||||||||||    
T  4948675 atcacataattcagtgtaattacaagtgtc-----ggtgtcggaca--cgagacacgcctaatcgaatgagtgtacgtgcttcatagaattta 4948760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 13437000 - 13436904
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcgg-----acacgcgggacacgcctaatcggaggagtgtttgtgcttcatagaattta 93  Q
    |||||||||||||  ||||| | ||||||| ||||||||||||     |||| ||||||||||||||||  |||||||| ||||||||||||| ||||    
T  13437000 atcacataattcatggtaataacaagtgtcggtgtcgtgtcggtgtcgacac-cgggacacgcctaatccaaggagtgtctgtgcttcatagatttta 13436904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 30077423 - 30077387
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcg 37  Q
    |||||||||||||||||||||| ||||||||||||||    
T  30077423 atcacataattcagtgtaattacaagtgtccgtgtcg 30077387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 11927122 - 11927083
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgt 40  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  11927122 atcacataattcagtgtaattatatgtgtcggtgtcgtgt 11927083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 15816165 - 15816126
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgt 40  Q
    ||||||||||| |||||||||||||||||| |||||||||    
T  15816165 atcacataatttagtgtaattataagtgtcggtgtcgtgt 15816126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 24362238 - 24362196
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcgg 43  Q
    |||||||||||||||||||||||| |||||  |||||||||||    
T  24362238 atcacataattcagtgtaattatatgtgtcaatgtcgtgtcgg 24362196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 26902211 - 26902174
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgt 38  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  26902211 atcacataattcagtgtaattatatgtgtcggtgtcgt 26902174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 2572092 - 2572052
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtc 41  Q
    ||||||||||| |||||||||| ||||||| ||||||||||    
T  2572092 atcacataatttagtgtaattacaagtgtcggtgtcgtgtc 2572052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 3025574 - 3025610
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcg 37  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  3025574 atcacataattcagtgtaattataggtgtcagtgtcg 3025610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 4786374 - 4786338
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcg 37  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  4786374 atcacataattcagtgtaattatatgtgtcggtgtcg 4786338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 8847279 - 8847315
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcg 37  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  8847279 atcacataattcagtgtaattatatgtgtcggtgtcg 8847315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 16867238 - 16867202
Alignment:
Q  4 acataattcagtgtaattataagtgtccgtgtcgtgt 40  Q
    |||||||| |||||||||||||||||| |||||||||    
T  16867238 acataatttagtgtaattataagtgtcggtgtcgtgt 16867202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 36450730 - 36450694
Alignment:
Q  51 ggacacgcctaatcggaggagtgtttgtgcttcatag 87  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  36450730 ggacacgcctaatccgaggagtgtctgtgcttcatag 36450694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 135348 - 135263
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcggacacgcgggacacgcctaatcggaggagtgtttgtgcttcatag 87  Q
    |||||||||||| ||||||||||| ||||| |||||||||| ||||| | |||||||||||||| |||| ||||| |||||||||||    
T  135348 atcacataattctgtgtaattatatgtgtcggtgtcgtgtccgacac-caggacacgcctaatctgaggcgtgttcgtgcttcatag 135263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 23443 - 23490
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcggacacg 48  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||    
T  23443 atcacataattcagtgtaattataagtgtcggtgtcgtgtcggacacg 23490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 23534 - 23576
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcgg 43  Q
    |||||||||||||||||||||||||||||| ||||||| ||||    
T  23534 atcacataattcagtgtaattataagtgtcagtgtcgtttcgg 23576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 11272617 - 11272531
Alignment:
Q  6 ataattcagtgtaattataagtgtccgtgtcgtgtcgg------acacgcgggacacgcctaatcggaggagtgtttgtgcttcata 86  Q
    ||||||||||||||||| ||||||| ||||||||||||      ||||||||||||||||||||| ||||||| | |||||||||||    
T  11272617 ataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgcgggacacgcctaatccgaggagtatctgtgcttcata 11272531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 18215222 - 18215150
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcggacacgcgggacacgcctaatcggaggagtgt 74  Q
    |||||||||| ||||||| ||| ||||||| |||||||||| ||||| |||||||||||||||| |||||||||    
T  18215222 atcacataatgcagtgtagttacaagtgtcggtgtcgtgtccgacac-cgggacacgcctaatctgaggagtgt 18215150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 35861987 - 35862070
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcggacacgcgggacacgcctaatcggaggagtgtttgtgcttcatag 87  Q
    ||||||||||||| ||||||| |||||||| |||||  ||||||||||  |||||||||||||| |||||||||  |||||||||||    
T  35861987 atcacataattcaatgtaattgtaagtgtctgtgtc--gtcggacacg-aggacacgcctaatccgaggagtgtccgtgcttcatag 35862070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 5409872 - 5409825
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcggacacg 48  Q
    |||||||||||||||| ||||| ||||||| |||||||||||||||||    
T  5409872 atcacataattcagtgcaattacaagtgtcggtgtcgtgtcggacacg 5409825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 32094056 - 32094009
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcggacacg 48  Q
    |||||||||||||||||||||| || |||| |||||||||||||||||    
T  32094056 atcacataattcagtgtaattacaaatgtcggtgtcgtgtcggacacg 32094009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 5548699 - 5548745
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcggacac 47  Q
    |||| ||||||||||||||||||| ||||| ||||||||||||||||    
T  5548699 atcaaataattcagtgtaattatatgtgtcagtgtcgtgtcggacac 5548745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 9778523 - 9778569
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcggacac 47  Q
    ||||||||||||||| |||||| ||||||| ||||||||||||||||    
T  9778523 atcacataattcagtataattacaagtgtcggtgtcgtgtcggacac 9778569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 18039022 - 18039064
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcgg 43  Q
    |||||||||||||||||||||| ||||||| ||||||||||||    
T  18039022 atcacataattcagtgtaattacaagtgtcggtgtcgtgtcgg 18039064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 24339665 - 24339707
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcgg 43  Q
    |||||||||||||||||||||| ||||||| ||||||||||||    
T  24339665 atcacataattcagtgtaattacaagtgtcggtgtcgtgtcgg 24339707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 35749922 - 35750006
Alignment:
Q  4 acataattcagtgtaattataagtgtccgtgtcgtgt--cggacacgcgggacacgcctaatcggaggagtgtttgtgcttcatag 87  Q
    |||| ||||||||||||| |||||||| |||||||||  | || || |||||||| |||| |||||||||||| ||||||||||||    
T  35749922 acattattcagtgtaattgtaagtgtcggtgtcgtgtgtccgaaac-cgggacacacctagtcggaggagtgtctgtgcttcatag 35750006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 22602746 - 22602705
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcg 42  Q
    |||||||||||||||||||||||| ||||| |||||||||||    
T  22602746 atcacataattcagtgtaattatatgtgtcggtgtcgtgtcg 22602705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 11890955 - 11890908
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcggacacg 48  Q
    |||| |||||||||||||||||| |||||  |||||||||||||||||    
T  11890955 atcatataattcagtgtaattatgagtgtaggtgtcgtgtcggacacg 11890908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 13770717 - 13770760
Alignment:
Q  4 acataattcagtgtaattataagtgtccgtgtcgtgtcggacac 47  Q
    ||||||||||||||||||| |||||||  |||||||||||||||    
T  13770717 acataattcagtgtaattacaagtgtcgttgtcgtgtcggacac 13770760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 87
Target Start/End: Complemental strand, 32094005 - 32093954
Alignment:
Q  36 cgtgtcggacacgcgggacacgcctaatcggaggagtgtttgtgcttcatag 87  Q
    |||||| |||||  ||||||||||||||| |||||||||| |||||||||||    
T  32094005 cgtgtccgacaccggggacacgcctaatccgaggagtgttcgtgcttcatag 32093954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 16341519 - 16341565
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcggacac 47  Q
    ||||||||||| |||||||||||| ||| | ||||||||||||||||    
T  16341519 atcacataattaagtgtaattatatgtgccggtgtcgtgtcggacac 16341565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 21560526 - 21560568
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcgg 43  Q
    |||||||||||||||||||||| ||||||| ||||||| ||||    
T  21560526 atcacataattcagtgtaattacaagtgtcggtgtcgtatcgg 21560568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 87
Target Start/End: Original strand, 24105759 - 24105797
Alignment:
Q  49 cgggacacgcctaatcggaggagtgtttgtgcttcatag 87  Q
    |||||||||||||| | ||||||||||||||||||||||    
T  24105759 cgggacacgcctaacccgaggagtgtttgtgcttcatag 24105797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 26033497 - 26033455
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcgg 43  Q
    |||||||||||||||||||||| ||||||| || |||||||||    
T  26033497 atcacataattcagtgtaattacaagtgtcggtctcgtgtcgg 26033455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 32308143 - 32308185
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcgg 43  Q
    ||||||||||||||||||||| || ||||| ||||||||||||    
T  32308143 atcacataattcagtgtaattgtatgtgtcagtgtcgtgtcgg 32308185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 87
Target Start/End: Complemental strand, 38134373 - 38134335
Alignment:
Q  49 cgggacacgcctaatcggaggagtgtttgtgcttcatag 87  Q
    |||||||||||||||| ||||||||| ||||||||||||    
T  38134373 cgggacacgcctaatccgaggagtgtatgtgcttcatag 38134335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 91
Target Start/End: Complemental strand, 38804527 - 38804485
Alignment:
Q  49 cgggacacgcctaatcggaggagtgtttgtgcttcatagaatt 91  Q
    ||||||| |||||||| ||||||||| ||||||||||||||||    
T  38804527 cgggacatgcctaatccgaggagtgtatgtgcttcatagaatt 38804485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 2334273 - 2334314
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcg 42  Q
    ||||||||||| |||||||||| ||||||| |||||||||||    
T  2334273 atcacataatttagtgtaattacaagtgtcggtgtcgtgtcg 2334314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 18013107 - 18013070
Alignment:
Q  4 acataattcagtgtaattataagtgtccgtgtcgtgtc 41  Q
    ||||||||||||||||||||| ||||| ||||||||||    
T  18013107 acataattcagtgtaattatatgtgtcagtgtcgtgtc 18013070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 19992024 - 19992061
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgt 38  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  19992024 atcacatatttcagtgtaattataagtgtcggtgtcgt 19992061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 27945067 - 27945104
Alignment:
Q  4 acataattcagtgtaattataagtgtccgtgtcgtgtc 41  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  27945067 acataattcagtgtaattacaagtgtcggtgtcgtgtc 27945104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 15680832 - 15680868
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcg 37  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  15680832 atcacataatttagtgtaattataagtgtcggtgtcg 15680868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 88
Target Start/End: Complemental strand, 21568611 - 21568560
Alignment:
Q  36 cgtgtcggacacgcgggacacgcctaatcggaggagtgtttgtgcttcataga 88  Q
    |||||||||||| ||||||| || ||||| ||||||||| |||||||||||||    
T  21568611 cgtgtcggacac-cgggacatgcttaatctgaggagtgtctgtgcttcataga 21568560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 27229347 - 27229307
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtc 41  Q
    ||||||||||| ||||||||||||||| || ||||||||||    
T  27229347 atcacataatttagtgtaattataagtatcggtgtcgtgtc 27229307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 25948923 - 25948876
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcggacacg 48  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||    
T  25948923 atcacataattcagtgtaattataagtgttggtgtcgtgtcggacacg 25948876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 11610544 - 11610629
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcggacacgcgggacacgcctaatcggaggagtgtttgtgcttcataga 88  Q
    |||||||||||||||||| ||| |||||||   |||||||| ||||  |||||||||||||||| |||||||||  ||||||||||||    
T  11610544 atcacataattcagtgtagttacaagtgtcaa-gtcgtgtccgacat-cgggacacgcctaatctgaggagtgtccgtgcttcataga 11610629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 14209136 - 14209178
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcgg 43  Q
    |||||||||||||||||||||| ||||||| ||||||||||||    
T  14209136 atcacataattcagtgtaattacaagtgtcagtgtcgtgtcgg 14209178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 86
Target Start/End: Original strand, 25211574 - 25211648
Alignment:
Q  13 agtgtaattataagtgtccgtgtcgtgtcg--gacacgcgggacacgcctaatcggaggagtgtttgtgcttcata 86  Q
    |||||||||||| ||||| ||||||||||   ||||| | |||||||||||||| ||| |||||||||||||||||    
T  25211574 agtgtaattatatgtgtcggtgtcgtgtccccgacac-caggacacgcctaatctgagaagtgtttgtgcttcata 25211648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 49651822 - 49651778
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcggac 45  Q
    ||||||||||||| |||||||| ||||||| ||||||||||||||    
T  49651822 atcacataattcactgtaattacaagtgtcggtgtcgtgtcggac 49651778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 14216915 - 14216954
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgt 40  Q
    |||| ||||||||||||||||| |||||||||||||||||    
T  14216915 atcatataattcagtgtaattacaagtgtccgtgtcgtgt 14216954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 14223044 - 14223083
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgt 40  Q
    |||| ||||||||||||||||| |||||||||||||||||    
T  14223044 atcatataattcagtgtaattacaagtgtccgtgtcgtgt 14223083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 27505269 - 27505316
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcggacacg 48  Q
    ||||||||||| |||||||||| ||||||| |||||||||| ||||||    
T  27505269 atcacataattaagtgtaattacaagtgtcggtgtcgtgtctgacacg 27505316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 40052381 - 40052431
Alignment:
Q  36 cgtgtcggacacgcgggacacgcctaatcggaggagtgtttgtgcttcatag 87  Q
    |||||| ||||| |||||||||||||||| |||||||||| |||||||||||    
T  40052381 cgtgtccgacac-cgggacacgcctaatccgaggagtgttcgtgcttcatag 40052431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 28918024 - 28918062
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtg 39  Q
    |||||||||||||||||||||| ||||||| ||||||||    
T  28918024 atcacataattcagtgtaattacaagtgtcggtgtcgtg 28918062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 32429416 - 32429331
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcggacacgcgggacacgcctaatcggaggagtgtttgtgcttcatag 87  Q
    |||||||||||||||| |||||||| | || ||||| ||||| | || |  |||||| ||||||||||||||||| || ||||||||    
T  32429416 atcacataattcagtgcaattataaatatcggtgtcatgtcgaatac-caagacacgtctaatcggaggagtgttcgtacttcatag 32429331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Complemental strand, 8039866 - 8039829
Alignment:
Q  6 ataattcagtgtaattataagtgtccgtgtcgtgtcgg 43  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  8039866 ataattcagtgtaattatatgtgtcggtgtcgtgtcgg 8039829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 21211376 - 21211413
Alignment:
Q  50 gggacacgcctaatcggaggagtgtttgtgcttcatag 87  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  21211376 gggacactcctaatccgaggagtgtttgtgcttcatag 21211413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 22774105 - 22774064
Alignment:
Q  2 tcacataattcagtgtaattataagtgtccgtgtcgtgtcgg 43  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||    
T  22774105 tcacatatttcagtgtaattataagtgtcggtgtcatgtcgg 22774064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 25775532 - 25775624
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgt---------gtcgtgtcggacacgcgggacacgcctaatcggaggagtgtttgtgcttcat 85  Q
    |||||||||||||||||||||| ||||||| ||         |||||||| ||||| | |||||||||||||| |||||||||| |||||||||    
T  25775532 atcacataattcagtgtaattacaagtgtcggtgtcggacacgtcgtgtccgacac-caggacacgcctaatccgaggagtgttcgtgcttcat 25775624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 7928473 - 7928509
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcg 37  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  7928473 atcacataattcagtgtaattatatgtgtcggtgtcg 7928509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 8383280 - 8383316
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcg 37  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  8383280 atcatataattcagtgtaattataagtgtcggtgtcg 8383316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 14747585 - 14747625
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtc 41  Q
    ||||||||||| |||||||||| ||| ||||||||||||||    
T  14747585 atcacataatttagtgtaattacaagggtccgtgtcgtgtc 14747625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 16789035 - 16789075
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtc 41  Q
    |||| ||||||||||||||||||||||||  ||||||||||    
T  16789035 atcatataattcagtgtaattataagtgttggtgtcgtgtc 16789075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 34185159 - 34185119
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtc 41  Q
    |||||| ||||||||||||||| ||||||| ||||||||||    
T  34185159 atcacacaattcagtgtaattacaagtgtcggtgtcgtgtc 34185119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 34307816 - 34307769
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtc-gtgtcggacacg 48  Q
    |||||||| |||||||||||||||||||| |||||| ||||||||||||    
T  34307816 atcacatatttcagtgtaattataagtgt-cgtgtcggtgtcggacacg 34307769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 40993371 - 40993335
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcg 37  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  40993371 atcacataattcagtgtaattatatgtgtcggtgtcg 40993335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 33153447 - 33153535
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcg---gacacgcgggacacgcctaatcggaggagtgtttgtgcttcatag 87  Q
    |||||||||||||||||||||| |||||||||||||||||||   ||||  ||||||||| |||||   |||||||| ||||||||||||    
T  33153447 atcacataattcagtgtaattacaagtgtccgtgtcgtgtcgtctgaca-tcgggacacgtctaattcaaggagtgtatgtgcttcatag 33153535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 44635521 - 44635612
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtc-gtgtcggacacg----cgggacacgcctaatcggaggagtgtttgtgcttcatag 87  Q
    ||||| |||||||||||||||| ||||||| ||||| ||||||||||||    || ||||||||||||| |||||||||  |||||||||||    
T  44635521 atcacgtaattcagtgtaattacaagtgtcggtgtcggtgtcggacacgacaccgagacacgcctaatctgaggagtgtccgtgcttcatag 44635612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 43
Target Start/End: Complemental strand, 12668456 - 12668417
Alignment:
Q  4 acataattcagtgtaattataagtgtccgtgtcgtgtcgg 43  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  12668456 acataattcagtgtaattataagtgtcggtgtcgtgtcgg 12668417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 32749861 - 32749820
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcg 42  Q
    |||||||||||||||||||| ||||||||| |||||||||||    
T  32749861 atcacataattcagtgtaataataagtgtcagtgtcgtgtcg 32749820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 36756377 - 36756341
Alignment:
Q  4 acataattcagtgtaattataagtgtccgtgtcgtgt 40  Q
    ||||||||||||||||||||||||||| |||||||||    
T  36756377 acataattcagtgtaattataagtgtcggtgtcgtgt 36756341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 974770 - 974817
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcggacacg 48  Q
    ||||||| |||||||||||||| ||||||| ||||||||| |||||||    
T  974770 atcacattattcagtgtaattacaagtgtcggtgtcgtgttggacacg 974817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 93
Target Start/End: Complemental strand, 10535721 - 10535679
Alignment:
Q  51 ggacacgcctaatcggaggagtgtttgtgcttcatagaattta 93  Q
    |||||||||||||| |||||||||| |||||||||||| ||||    
T  10535721 ggacacgcctaatccgaggagtgttcgtgcttcatagacttta 10535679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 23058478 - 23058436
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcgg 43  Q
    |||||||||| ||||||||||| ||||||| ||||||||||||    
T  23058478 atcacataatccagtgtaattacaagtgtcggtgtcgtgtcgg 23058436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 34785018 - 34784976
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcgg 43  Q
    ||||||||||| |||||||||||| ||||| ||||||||||||    
T  34785018 atcacataatttagtgtaattatatgtgtcggtgtcgtgtcgg 34784976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 11223831 - 11223790
Alignment:
Q  49 cgggacacgcctaatcggaggagtgtttgtgcttcatagaat 90  Q
    |||||||||||||||| |||||||||  ||||||||||||||    
T  11223831 cgggacacgcctaatctgaggagtgtccgtgcttcatagaat 11223790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 30717566 - 30717525
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcg 42  Q
    |||||||||||||||||||||| |||||||  ||||||||||    
T  30717566 atcacataattcagtgtaattacaagtgtcgatgtcgtgtcg 30717525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 35056896 - 35056933
Alignment:
Q  6 ataattcagtgtaattataagtgtccgtgtcgtgtcgg 43  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  35056896 ataattcagtgtaattatatgtgtcggtgtcgtgtcgg 35056933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2438755 - 2438719
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcg 37  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  2438755 atcacataattcagtgtaattacaagtgtcggtgtcg 2438719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 5367215 - 5367251
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcg 37  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  5367215 atcacataattcagtgtaattatatgtgtcggtgtcg 5367251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 18421986 - 18422022
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcg 37  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  18421986 atcacataattcagtgtaattacaagtgtcggtgtcg 18422022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 18622629 - 18622669
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtc 41  Q
    |||||||||||||||||||||||| ||||  ||||||||||    
T  18622629 atcacataattcagtgtaattatacgtgttggtgtcgtgtc 18622669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 19536433 - 19536397
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcg 37  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  19536433 atcacataattcagtgtaattacaagtgtcggtgtcg 19536397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 20242763 - 20242727
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcg 37  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  20242763 atcacataattcagtgtaattatatgtgtcggtgtcg 20242727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 28596492 - 28596528
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcg 37  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  28596492 atcacataagtcagtgtaattataagtgtcggtgtcg 28596528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 2436945 - 2437030
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcggacacgcgggacacgcctaatcggaggagtgtttgtgcttcatag 87  Q
    ||||||||||||  ||| |||||| ||||| |||||||||| ||||| |  ||||||||||||| |||||||||| |||||||||||    
T  2436945 atcacataattcgttgtgattatatgtgtcggtgtcgtgtccgacac-caagacacgcctaatccgaggagtgttcgtgcttcatag 2437030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 25888329 - 25888287
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcgg 43  Q
    |||| |||||||||||||||||||||| |||||||||||||||    
T  25888329 atcatataattcagtgtaattataagtctccgtgtcgtgtcgg 25888287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 39698564 - 39698606
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcgg 43  Q
    |||||||||||||||||||||| ||||||| ||||||||||||    
T  39698564 atcacataattcagtgtaattacaagtgtcagtgtcgtgtcgg 39698606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 6471925 - 6471842
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcggacacgcgggacacgcctaatcggaggagtgtttgtgcttcatag 87  Q
    |||||||||||||||||||||||| ||||  ||||||||| |||||    | |||||||||||| |||| |||  ||||||||||||    
T  6471925 atcacataattcagtgtaattatatgtgtgggtgtcgtgtgggaca---tgtacacgcctaatccgaggggtgaatgtgcttcatag 6471842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 13287435 - 13287354
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcggacacgcgggacacgcctaatcggaggagtgtttgtgcttcata 86  Q
    ||||||||||||||||||| || ||||||| |||||||||    |  |  |||||||||||||| ||||||||| |||||||||||    
T  13287435 atcacataattcagtgtaactacaagtgtcggtgtcgtgt----cctgtcggacacgcctaatctgaggagtgtatgtgcttcata 13287354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 6247645 - 6247729
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcggacacg---cgggacacgcctaatcggaggagtgtttgtgcttcatag 87  Q
    |||||||||||||||||||||| |||||||      ||||||||||||   |||||||| ||||||| ||| ||||| ||||||||||||    
T  6247645 atcacataattcagtgtaattacaagtgtc-----ggtgtcggacacggcacgggacacacctaatccgagaagtgtctgtgcttcatag 6247729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 21542056 - 21542095
Alignment:
Q  4 acataattcagtgtaattataagtgtccgtgtcgtgtcgg 43  Q
    ||||||||||||||||||| ||||||| ||||||||||||    
T  21542056 acataattcagtgtaattacaagtgtcggtgtcgtgtcgg 21542095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 27932304 - 27932354
Alignment:
Q  36 cgtgtcggacacgcgggacacgcctaatcggaggagtgtttgtgcttcatag 87  Q
    |||||||||||| | |||||||||||||  ||||||||||||||||||||||    
T  27932304 cgtgtcggacac-caggacacgcctaattcgaggagtgtttgtgcttcatag 27932354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 31084346 - 31084393
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcggacacg 48  Q
    ||||||||||||| |||||||| |||||||  ||||||||||||||||    
T  31084346 atcacataattcaatgtaattacaagtgtcgatgtcgtgtcggacacg 31084393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 7677728 - 7677770
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcgg 43  Q
    |||||||||||||||| ||||| ||||||| ||||||||||||    
T  7677728 atcacataattcagtgcaattagaagtgtcggtgtcgtgtcgg 7677770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 15884011 - 15884096
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcggacacgcgggacacgcctaatcggaggagtgtttgtgcttcatag 87  Q
    |||||||||||||||||||||| ||||||| ||||||     |||||  || |||||||||||| ||||||||| |||| |||||||    
T  15884011 atcacataattcagtgtaattacaagtgtcggtgtcggacacgacac-tggaacacgcctaatccgaggagtgtctgtgtttcatag 15884096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 21351940 - 21351899
Alignment:
Q  2 tcacataattcagtgtaattataagtgtccgtgtcgtgtcgg 43  Q
    ||||||||||||||||||||| ||||||| ||||| ||||||    
T  21351940 tcacataattcagtgtaattacaagtgtcggtgtcatgtcgg 21351899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 38464400 - 38464313
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcg--tgtcggacacgcgggacacgcctaatcggaggagtgtttgtgcttcatag 87  Q
    ||||||| ||||| || ||||||||||||| ||| |   |||| ||||| |||||||| ||||||| ||||||||| ||||||||||||    
T  38464400 atcacattattcattgaaattataagtgtcagtggcacatgtccgacac-cgggacacacctaatccgaggagtgtctgtgcttcatag 38464313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 3966526 - 3966566
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtc 41  Q
    |||||| ||||||||||||||||| ||||| ||||||||||    
T  3966526 atcacacaattcagtgtaattatatgtgtcggtgtcgtgtc 3966566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 11596434 - 11596398
Alignment:
Q  51 ggacacgcctaatcggaggagtgtttgtgcttcatag 87  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  11596434 ggacacgcctaatccgaggagtatttgtgcttcatag 11596398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 19820366 - 19820326
Alignment:
Q  49 cgggacacgcctaatcggaggagtgtttgtgcttcatagaa 89  Q
    |||||||||||||||| |||||||||  |||||||||||||    
T  19820366 cgggacacgcctaatcagaggagtgtccgtgcttcatagaa 19820326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 21191092 - 21191056
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcg 37  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  21191092 atcacataattcagtgtaattacaagtgtcggtgtcg 21191056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 28588710 - 28588674
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcg 37  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  28588710 atcacataattcagtgtaattataggtgtcggtgtcg 28588674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 41091293 - 41091253
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtc 41  Q
    |||||||||||||||||||||||| |||||  |||||||||    
T  41091293 atcacataattcagtgtaattatatgtgtcgatgtcgtgtc 41091253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 43564904 - 43564940
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcg 37  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  43564904 atcacataatttagtgtaattataagtgtcggtgtcg 43564940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 263406 - 263366
Alignment:
Q  3 cacataattcagtgtaattataagtgtccgtgtcgtgtcgg 43  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  263406 cacataattcagtgtaattataagtgtcagtgtcgtgtcgg 263366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 20195 - 20261
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcggacacgcgggacacgcctaatcggaggagt 72  Q
    |||||||||||||||||||||| ||||||| |||||||||||     | ||||||||||||||| |||||||    
T  20195 atcacataattcagtgtaattacaagtgtcagtgtcgtgtcg-----gtgggacacgcctaatccgaggagt 20261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 3947798 - 3947755
Alignment:
Q  5 cataattcagtgtaattataagtgtccgtgtcgtgtcggacacg 48  Q
    |||||||||||||||||| ||||||| |||||||||||||||||    
T  3947798 cataattcagtgtaattacaagtgtcagtgtcgtgtcggacacg 3947755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 30982914 - 30982872
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcgg 43  Q
    |||||||| ||||||||||||||||||||| ||||||||||||    
T  30982914 atcacatatttcagtgtaattataagtgtcggtgtcgtgtcgg 30982872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 16184913 - 16184950
Alignment:
Q  50 gggacacgcctaatcggaggagtgtttgtgcttcatag 87  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  16184913 gggacacgcctaatccgaggagtgtttgtgcttcatag 16184950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 87
Target Start/End: Original strand, 20633508 - 20633590
Alignment:
Q  4 acataattcagtgtaattataagtgtccgtgtcg-tgtcggacacgcgggacacgcctaatcggaggagtgtttgtgcttcatag 87  Q
    |||||||||| |||||||| ||||||| |||||| |||||||||| |  |||||||||||||  ||||||||| |||||||||||    
T  20633508 acataattcaatgtaattacaagtgtc-gtgtcggtgtcggacac-caagacacgcctaatccaaggagtgttcgtgcttcatag 20633590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 54580059 - 54580023
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcg 37  Q
    |||||||||||||||||||||||||||||| ||||||    
T  54580059 atcacataattcagtgtaattataagtgtcggtgtcg 54580023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 12895152 - 12895105
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcggacacg 48  Q
    |||||||||||||  ||||||| ||||||| |||||||||||||||||    
T  12895152 atcacataattcaaagtaattacaagtgtcggtgtcgtgtcggacacg 12895105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 4383390 - 4383432
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcgg 43  Q
    |||||||||||||||||||||| || |||| ||||||||||||    
T  4383390 atcacataattcagtgtaattacaaatgtcagtgtcgtgtcgg 4383432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 87
Target Start/End: Complemental strand, 12895252 - 12895214
Alignment:
Q  49 cgggacacgcctaatcggaggagtgtttgtgcttcatag 87  Q
    |||||||||||||||| |||||||||| |||||||||||    
T  12895252 cgggacacgcctaatccgaggagtgttcgtgcttcatag 12895214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 22234926 - 22234884
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcgg 43  Q
    ||||||||||||||||||||| || ||||| ||||||||||||    
T  22234926 atcacataattcagtgtaattctatgtgtcggtgtcgtgtcgg 22234884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 28084545 - 28084587
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcgg 43  Q
    ||||||||||||| |||||||| ||||||| ||||||||||||    
T  28084545 atcacataattcaatgtaattacaagtgtctgtgtcgtgtcgg 28084587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 88
Target Start/End: Original strand, 29205550 - 29205588
Alignment:
Q  50 gggacacgcctaatcggaggagtgtttgtgcttcataga 88  Q
    ||||||||||||||| |||||||||| ||||||||||||    
T  29205550 gggacacgcctaatccgaggagtgttcgtgcttcataga 29205588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 11596388 - 11596297
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcg------tgtcggacacgcgggacacgcctaatcggaggagtgtttgtgcttcatag 87  Q
    |||||||||||||||||||||| ||||||  ||||||      |||| ||||  |||||||||||||||| |||||||||  |||||||||||    
T  11596388 atcacataattcagtgtaattacaagtgtaggtgtcgtgtcattgtccgaca-tcgggacacgcctaatctgaggagtgtccgtgcttcatag 11596297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 19312358 - 19312399
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcg 42  Q
    ||||||| ||||||||||||||||||| || |||||||||||    
T  19312358 atcacatgattcagtgtaattataagtatcggtgtcgtgtcg 19312399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 8423754 - 8423718
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcg 37  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  8423754 atcacataattcagtgtaattataaatgtcggtgtcg 8423718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 12797374 - 12797338
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcg 37  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  12797374 atcacataattcagtgtaattacaagtgtcggtgtcg 12797338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 14126146 - 14126118
Alignment:
Q  2 tcacataattcagtgtaattataagtgtc 30  Q
    |||||||||||||||||||||||||||||    
T  14126146 tcacataattcagtgtaattataagtgtc 14126118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 28964284 - 28964248
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcg 37  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  28964284 atcacataattcagtgtaattacaagtgtctgtgtcg 28964248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 30621788 - 30621752
Alignment:
Q  52 gacacgcctaatcggaggagtgtttgtgcttcataga 88  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  30621788 gacacgcctaatccgaggagtatttgtgcttcataga 30621752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 88
Target Start/End: Original strand, 37203290 - 37203372
Alignment:
Q  4 acataattcagtgtaattataagtgtccgtgtcgtgtcggacacgcgggacacgcctaatcggaggagtgtttgtgcttcataga 88  Q
    |||||||| |||||||||| ||||||  |||||| ||| ||||| ||||||||| |||||| ||| |||||  ||||||||||||    
T  37203290 acataatttagtgtaattacaagtgta-gtgtcgggtccgacac-cgggacacgtctaatccgagaagtgtccgtgcttcataga 37203372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 42640552 - 42640588
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcg 37  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  42640552 atcacataattcagtgtaattacaagtgtcggtgtcg 42640588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 49431049 - 49431085
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcg 37  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  49431049 atcacataattcagtgtaattaaaagtgtcggtgtcg 49431085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 53203 - 53245
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcgg 43  Q
    |||||||||||||||||||||||||||||| ||| ||||||||    
T  53203 atcacataattcagtgtaattataagtgtcggtgccgtgtcgg 53245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 25804 - 25765
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgt 40  Q
    ||||||||||| |||||||||||||||||| |||||||||    
T  25804 atcacataatttagtgtaattataagtgtcggtgtcgtgt 25765  T

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Target: scaffold0136 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 3885 - 3846
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgt 40  Q
    |||||||||||||||||||||| ||||||| |||||||||    
T  3885 atcacataattcagtgtaattacaagtgtcagtgtcgtgt 3846  T

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Target: scaffold0025 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 23793 - 23832
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgt 40  Q
    |||||||||||||||||||||| ||||||| |||||||||    
T  23793 atcacataattcagtgtaattacaagtgtcggtgtcgtgt 23832  T

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Target: scaffold0227 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 88
Target Start/End: Original strand, 15053 - 15091
Alignment:
Q  50 gggacacgcctaatcggaggagtgtttgtgcttcataga 88  Q
    ||||||||||| ||| |||||||||||||||||||||||    
T  15053 gggacacgccttatccgaggagtgtttgtgcttcataga 15091  T

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Target: scaffold0123 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 44561 - 44519
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtcgg 43  Q
    |||||||||||||||||||||||| ||||| || |||||||||    
T  44561 atcacataattcagtgtaattatatgtgtcggtatcgtgtcgg 44519  T

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Target: scaffold0361 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 14611 - 14652
Alignment:
Q  52 gacacgcctaatcggaggagtgtttgtgcttcatagaattta 93  Q
    |||||||||||||| ||||||||  |||||||||||||||||    
T  14611 gacacgcctaatcgaaggagtgtacgtgcttcatagaattta 14652  T

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Target: scaffold0050 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 70304 - 70337
Alignment:
Q  4 acataattcagtgtaattataagtgtccgtgtcg 37  Q
    ||||||||||||||||||||||||||| ||||||    
T  70304 acataattcagtgtaattataagtgtcggtgtcg 70337  T

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Target: scaffold0049 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 43
Target Start/End: Original strand, 56950 - 56987
Alignment:
Q  6 ataattcagtgtaattataagtgtccgtgtcgtgtcgg 43  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  56950 ataattcagtgtaatcataagtgtcagtgtcgtgtcgg 56987  T

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Target: scaffold0122 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 8689 - 8729
Alignment:
Q  1 atcacataattcagtgtaattataagtgtccgtgtcgtgtc 41  Q
    |||||||| |||||| |||||||||||||| ||||||||||    
T  8689 atcacatagttcagtataattataagtgtcggtgtcgtgtc 8729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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