View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8491_low_42 (Length: 245)
Name: NF8491_low_42
Description: NF8491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8491_low_42 |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 58 - 245
Target Start/End: Original strand, 29206133 - 29206336
Alignment:
| Q |
58 |
cgccgtctaattaagtggagctaggctatatggtacaaaagctctcaagttttctctctatggcat----------------aacatgcatgaaattaat |
141 |
Q |
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| T |
29206133 |
cgccgtctaattaagtggagctaggctatatggtacaaaagctcttaagttttctctctatggcatggcatggatagtgtacaacatgcatgaaattaat |
29206232 |
T |
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| Q |
142 |
gtgacattatagatgcttctcttcgcaaccgtataaagcttctatttaatggggttgttaagagcttgatgaccacattggtgcatgttgtaaaatccat |
241 |
Q |
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| T |
29206233 |
gtgacattatagatgcttctcttcgcaactgtataaagcttctatttaatggggttgttaagagcttgatgaccacattggtgcatgttgtaaaatccat |
29206332 |
T |
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| Q |
242 |
tgcc |
245 |
Q |
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|||| |
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| T |
29206333 |
tgcc |
29206336 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 38379783 - 38379727
Alignment:
| Q |
189 |
aatggggttgttaagagcttgatgaccacattggtgcatgttgtaaaatccattgcc |
245 |
Q |
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| T |
38379783 |
aatggagttgttgagagtttgatgaccacattggtcaatgttgtagaatccattgcc |
38379727 |
T |
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