View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8491_low_43 (Length: 239)

Name: NF8491_low_43
Description: NF8491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8491_low_43
NF8491_low_43
[»] chr4 (5 HSPs)
chr4 (90-156)||(28166534-28166600)
chr4 (15-91)||(28166199-28166275)
chr4 (85-131)||(28171114-28171160)
chr4 (183-223)||(28166591-28166631)
chr4 (125-197)||(28171182-28171254)


Alignment Details
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 90 - 156
Target Start/End: Original strand, 28166534 - 28166600
Alignment:
Q  90 tatttcattgagaggttgtttaatgtatcaaccttcatgtgtatataattaagcctcgattagcttt 156  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  28166534 tatttcattaagaggttgtttaatgtatcaaccttcatgtgtatataattaagcctcaattaccttt 28166600  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 28166199 - 28166275
Alignment:
Q  15 agaataaaatatgtgggcacaaagtaatctactttatattgtttagggttattgtttattttgggggttaaatcata 91  Q
    ||||||||| || |||| |||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  28166199 agaataaaacatatgggtacaaaggaatctactttatattgtttagggttattgtttattttcgaggttaaatcata 28166275  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 28171114 - 28171160
Alignment:
Q  85 aatcatatttcattgagaggttgtttaatgtatcaaccttcatgtgt 131  Q
    ||||||||||||| |||||||||||||||||||||| || |||||||    
T  28171114 aatcatatttcatcgagaggttgtttaatgtatcaagctccatgtgt 28171160  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 28166591 - 28166631
Alignment:
Q  183 aattacttttaatatctgtgtcaactgtattacgtgtatct 223  Q
    |||||| |||||||||||| |||||||||||||||||||||    
T  28166591 aattacctttaatatctgtatcaactgtattacgtgtatct 28166631  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 28171182 - 28171254
Alignment:
Q  125 catgtgtatataattaagcctcgattagctttttaatgactaaagttaacaatgtatgaattacttttaatat 197  Q
    ||||||| |||||||||||||| |||| |||||| | |  ||||||| | ||||||| ||||||||| |||||    
T  28171182 catgtgtttataattaagcctcaattatcttttttagggttaaagtttaaaatgtataaattactttcaatat 28171254  T

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