View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8491_low_47 (Length: 235)
Name: NF8491_low_47
Description: NF8491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8491_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 233
Target Start/End: Complemental strand, 8402799 - 8402579
Alignment:
| Q |
13 |
agaattgattctattactcttcccttggaccttggtatttgttggtcatgaacgcttcgcatatatctctatgtattttgttcaagactctcttaatatg |
112 |
Q |
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| T |
8402799 |
agaattgattctattactcttcccttggaccttggtatttgttggtcatgaacgcttcgcatatatctctatgtattttgttcaagactctcttaatatg |
8402700 |
T |
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| Q |
113 |
aggggtatcttcattcatgaatcaaacaagtttcctctctttataaacaagtggcaatttagcatattttatacaaccaacatttctctgtctctaacta |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8402699 |
aggggtatcttcattcatgaatcaaacaagtttcctctctttaaaaacaagtggcaatttagcatattttatacaaccaacatttctctgtctctaacta |
8402600 |
T |
|
| Q |
213 |
caattttgtgcgtacaaaagg |
233 |
Q |
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|||||||||| |||||||||| |
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| T |
8402599 |
caattttgtgggtacaaaagg |
8402579 |
T |
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