View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8491_low_48 (Length: 227)
Name: NF8491_low_48
Description: NF8491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8491_low_48 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 29769664 - 29769890
Alignment:
| Q |
1 |
gaactaactaaagatgaagttgatgttacttaccgataaggtcagggaggttgacaccattggagaagcgaccggtgggacgatgaccgggataatcgat |
100 |
Q |
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| T |
29769664 |
gaactaactaaagatgaagttgatgttacttaccgataaggtcagggaggttgacaccattggagaagcgaccggtgggacgatgaccgggataatcgat |
29769763 |
T |
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| Q |
101 |
gccataaggaggagagtcggcacgtgccgtggttagcaaataattattgttgccactgtcaacaagtgagtcaccaaaaacaaagaaagcacgagatgca |
200 |
Q |
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| T |
29769764 |
gccataaggaggagagtcggcacgtgccgtggttagcaaataattattgttgccactgtcaacaagtgagtcaccaaaaacaaagaaagcacgagatgca |
29769863 |
T |
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| Q |
201 |
gcttgaactctcattgtaacaaccaag |
227 |
Q |
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| T |
29769864 |
gcttgaactctcattgtaacaaccaag |
29769890 |
T |
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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 90 - 190
Target Start/End: Complemental strand, 48100437 - 48100337
Alignment:
| Q |
90 |
ggataatcgatgccataaggaggagagtcggcacgtgccgtggttagcaaataattattgttgccactgtcaacaagtgagtcaccaaaaacaaagaaag |
189 |
Q |
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| T |
48100437 |
ggataatcaattccataaggaggagaatcagccctagcagtagttaccaaataattgttgttgccactgtcaacaagtgaatcaccaaatacaaagaaag |
48100338 |
T |
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| Q |
190 |
c |
190 |
Q |
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| T |
48100337 |
c |
48100337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 184
Target Start/End: Complemental strand, 48074528 - 48074379
Alignment:
| Q |
35 |
gataaggtcagggaggttgacaccattggagaagcgaccggtgggacgatgaccgggataatcgatgccataaggaggagagtcggcacgtgccgtggtt |
134 |
Q |
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| T |
48074528 |
gataaggtcaggcatgttgaggccattggagaagcgtccagtggcacggtgagttggataatcaatgccataagggtaagaatcagcacgagcagtggtt |
48074429 |
T |
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| Q |
135 |
agcaaataattattgttgccactgtcaacaagtgagtcaccaaaaacaaa |
184 |
Q |
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|| || |||||||||||| ||||||||||||| |||||||||||||| |
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| T |
48074428 |
gctaagtagttattgttgccattgtcaacaagtgaatcaccaaaaacaaa |
48074379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 190
Target Start/End: Complemental strand, 1807335 - 1807235
Alignment:
| Q |
90 |
ggataatcgatgccataaggaggagagtcggcacgtgccgtggttagcaaataattattgttgccactgtcaacaagtgagtcaccaaaaacaaagaaag |
189 |
Q |
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|||||||| || |||||||||||||| || ||||| || || || ||||||||||| || || ||| | ||||||||||| || ||||| ||||| |||| |
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| T |
1807335 |
ggataatcaattccataaggaggagaatcagcacgagcagttgtaagcaaataattgttatttccattatcaacaagtgaatctccaaatacaaaaaaag |
1807236 |
T |
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| Q |
190 |
c |
190 |
Q |
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| T |
1807235 |
c |
1807235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 193
Target Start/End: Complemental strand, 48091529 - 48091426
Alignment:
| Q |
90 |
ggataatcgatgccataaggaggagagtcggcacgtgccgtggttagcaaataattattgttgccactgtcaacaagtgagtcaccaaaaacaaagaaag |
189 |
Q |
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|||||||| |||||||||||||||| || || || || || ||| || ||||||||||| ||| | |||||||| || |||||||| |||||||||| |
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| T |
48091529 |
ggataatcaatgccataaggaggagcatcagctcgagcagtagttgctaagtaattattgttaccattatcaacaagagaatcaccaaacacaaagaaag |
48091430 |
T |
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| Q |
190 |
cacg |
193 |
Q |
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|||| |
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| T |
48091429 |
cacg |
48091426 |
T |
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