View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8491_low_5 (Length: 638)
Name: NF8491_low_5
Description: NF8491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8491_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 605; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 1 - 621
Target Start/End: Complemental strand, 6194876 - 6194256
Alignment:
| Q |
1 |
cgtatgccgcacagcaatgttaaacaactgtggcaggggacgaaggtaatacatgcacgtgtaatcacatgttttgtttttagagtttgtatcttaatac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6194876 |
cgtatgccgcacagcaatgttaaacaactgtggcaggggacgaaggtaatacatacacgtgtaatcacatgttttgtttttagagtttgcatcttaatac |
6194777 |
T |
|
| Q |
101 |
gttgttttgaaattcacaggaactgggtaaattagagggaattgaccttagtgaatgtaagcaatttgaaaagcttccgaatttttctaaggcgtcaagt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
6194776 |
gttgttttgaaattcacaggaactgggtaaattagagggaattgaccttagtgaatgcaagcaatttgaaaagcttccgaatttttctaaggcgtcaagt |
6194677 |
T |
|
| Q |
201 |
ctgaaatgggttaatctttctggttgtgagagtctggttgatcttcatccatctgttttatgcgcagatacacttgttactttgatactggataggtgta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6194676 |
ctgaaatgggttaatctttctggttgtgagagtctggttgatcttcatccatctgttttatgcgcagatacacttgttactttgatactggataggtgta |
6194577 |
T |
|
| Q |
301 |
caaaggttaggagggttagaggtgaaaaacatttaaattttttggagaagatcagtgtggatgggtgcaaaagtctggaggaatttgcagtgtcctcgga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6194576 |
caaaggttaggagggttagaggtgaaaaacatttaaattttttggagaagatcagtgtggatgggtgcaaaagtctggaggaatttgcagtgtcctcgga |
6194477 |
T |
|
| Q |
401 |
tttaattgaaaacttggatttaagcagtacaggaatcaaaacactggacctatcaattggacgtcttcaaaaactcaaacaacttaatctagagagttta |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6194476 |
tttaattgaaaacttggatttaagcagtacaggaatcaaaacactggacctatcaattggacgtcttcaaaaactcaaacaacttaatctagagagttta |
6194377 |
T |
|
| Q |
501 |
agactcaaccgtattccgaaggagttatctagtgtgagatctattagggaattgaagatttctggcagtagactaatagttgagaaaaaacagctacatg |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6194376 |
agactcaaccgtattccgaaggagttatctagtgtgagatctattagggaattgaagatttctggcagtagactaatagttgagaaaaaacagctacatg |
6194277 |
T |
|
| Q |
601 |
agctgtttgatggcttacaat |
621 |
Q |
| |
|
|| |||||||||||||||||| |
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| T |
6194276 |
agttgtttgatggcttacaat |
6194256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 114 - 618
Target Start/End: Complemental strand, 6070383 - 6069879
Alignment:
| Q |
114 |
tcacaggaactgggtaaattagagggaattgaccttagtgaatgtaagcaatttgaaaagcttccgaatttttctaaggcgtcaagtctgaaatgggtta |
213 |
Q |
| |
|
||||||||| | | ||||||||||||||||||| | |||||||| ||||| |||| | ||||||| |||| |||||||||||||| || |||||| ||| |
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|
| T |
6070383 |
tcacaggaatttgataaattagagggaattgacatgagtgaatgcaagcattttgtacagcttccagatttgtctaaggcgtcaagacttaaatggatta |
6070284 |
T |
|
| Q |
214 |
atctttctggttgtgagagtctggttgatcttcatccatctgttttatgcgcagatacacttgttactttgatactggataggtgtacaaaggttaggag |
313 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
6070283 |
atctctctggttgtgagagtctggttgatcttcatccgtctgttttatgtgcaaacacacttgttactttgatactggataggtgtacaaaggttagaag |
6070184 |
T |
|
| Q |
314 |
ggttagaggtgaaaaacatttaaattttttggagaagatcagtgtggatgggtgcaaaagtctggaggaatttgcagtgtcctcggatttaattgaaaac |
413 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
6070183 |
cgttagaggtgaaaaacatttaagttttttggaggagatcagtgtggatgggtgcacaagtttggaggaatttgcagtgtcctcggatttaattgaaaac |
6070084 |
T |
|
| Q |
414 |
ttggatttaagcagtacaggaatcaaaacactggacctatcaattggacgtcttcaaaaactcaaacaacttaatctagagagtttaagactcaaccgta |
513 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||| | |||| |||||||||||||||||||||||||| || | |
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|
| T |
6070083 |
ttggatttaagcagtacaggaatccaaacactggacctatcaattggttgtcttcccaaaattaaacgacttaatctagagagtttaagactcagccatc |
6069984 |
T |
|
| Q |
514 |
ttccgaaggagttatctagtgtgagatctattagggaattgaagatttctggcagtagactaatagttgagaaaaaacagctacatgagctgtttgatgg |
613 |
Q |
| |
|
|||| ||||||||| ||||||||| |||| | ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6069983 |
ttccaaaggagttacctagtgtgatatctctaagggagttgaagatttctggcagtagactaatagttgagaaacaacagctacatgagctgtttgatgg |
6069884 |
T |
|
| Q |
614 |
cttac |
618 |
Q |
| |
|
||||| |
|
|
| T |
6069883 |
cttac |
6069879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 381 - 441
Target Start/End: Complemental strand, 6086283 - 6086223
Alignment:
| Q |
381 |
gaatttgcagtgtcctcggatttaattgaaaacttggatttaagcagtacaggaatcaaaa |
441 |
Q |
| |
|
|||||| |||||| ||| |||| |||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
6086283 |
gaattttcagtgttctcagattcaattgaaagtttggatttaagcaacacaggaatcaaaa |
6086223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 118 - 587
Target Start/End: Original strand, 37452215 - 37452684
Alignment:
| Q |
118 |
aggaactgggtaaattagagggaattgaccttagtgaatgtaagcaatttgaaaagcttccgaatttttctaaggcgtcaagtctgaaatgggttaatct |
217 |
Q |
| |
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||||||| ||||||||||| ||||||||||| |||||||| ||||| || |||||||||| |||||||||||||||||||||| |||||||||||||| |
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|
| T |
37452215 |
aggaactaggtaaattagaaggaattgacctgagtgaatgcaagcacttaataaagcttccggatttttctaaggcgtcaagtcttaaatgggttaatct |
37452314 |
T |
|
| Q |
218 |
ttctggttgtgagagtctggttgatcttcatccatctgttttatgcgcagatacacttgttactttgatactggataggtgtacaaaggttaggagggtt |
317 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||| ||| ||| ||| |
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|
| T |
37452315 |
ctctggttgtgagagtctagttgatcttcctccatctgttttatgtgcagatatgcttgttactttgatactgcataggtgtacaaagattacgagtgtt |
37452414 |
T |
|
| Q |
318 |
agaggtgaaaaacatttaaattttttggagaagatcagtgtggatgggtgcaaaagtctggaggaatttgcagtgtcctcggatttaattgaaaacttgg |
417 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| | ||||||||||||||| |||||||||||||||||| |
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|
| T |
37452415 |
agaggtgaaaaacatttaaattgtttggagaagatcagtgtggatgggtgcaagagtctgaaaatttttgcagtgtcctcgaatttaattgaaaacttgg |
37452514 |
T |
|
| Q |
418 |
atttaagcagtacaggaatcaaaacactggacctatcaattggacgtcttcaaaaactcaaacaacttaatctagagagtttaagactcaaccgtattcc |
517 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| | ||| |||||||||||| |||||||||||| ||||||| ||||||| || |||| |
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| T |
37452515 |
atttaagcagtacaggaatccaaacactggacctatcaattgggagccttgaaaaactcaaacgacttaatctagatagtttaaaactcaactgtcttcc |
37452614 |
T |
|
| Q |
518 |
gaaggagttatctagtgtgagatctattagggaattgaagatttctggcagtagactaatagttgagaaa |
587 |
Q |
| |
|
||| |||||||||||||| ||||||||| || ||||| |||||||||||| |||||||||||||||| |
|
|
| T |
37452615 |
agaggggttatctagtgtgacatctattagtgagttgaaaatttctggcagtgcactaatagttgagaaa |
37452684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 37452085 - 37452132
Alignment:
| Q |
4 |
atgccgcacagcaatgttaaacaactgtggcaggggacgaaggtaata |
51 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
37452085 |
atgccgcacagcaatgttaaacaactgtggcaggggatgaaggtaata |
37452132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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