View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8491_low_53 (Length: 209)
Name: NF8491_low_53
Description: NF8491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8491_low_53 |
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Alignment Details
Target: chr2 (Bit Score: 124; Significance: 6e-64; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 31623919 - 31624042
Alignment:
| Q |
1 |
ttttgtcatgttgatcatcatcagaagtttttggtggaattgttattccctgagcattctccgtttttggaccagtccccaatcctcttcttcctttcct |
100 |
Q |
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| T |
31623919 |
ttttgtcatgttgatcatcatcagaagtttttggtggaattgttattccctgagcattctccgtttttggaccagtccccaatcctcttcttcctttcct |
31624018 |
T |
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| Q |
101 |
acccgttggtttctttccaacaac |
124 |
Q |
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| T |
31624019 |
acccgttggtttctttccaacaac |
31624042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 149 - 198
Target Start/End: Original strand, 31624067 - 31624116
Alignment:
| Q |
149 |
agcacattttctaaagagaaacaacaaatatagttatattcatcattcat |
198 |
Q |
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| T |
31624067 |
agcacattttctgaagagaaacaacaaatatagttatattcatgattcat |
31624116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 190
Target Start/End: Original strand, 31605386 - 31605427
Alignment:
| Q |
149 |
agcacattttctaaagagaaacaacaaatatagttatattca |
190 |
Q |
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| T |
31605386 |
agcacattttctgaagagaaacaacaaatatagttatattca |
31605427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 111
Target Start/End: Original strand, 31608376 - 31608473
Alignment:
| Q |
14 |
atcatcatcagaagtttttggtggaattgttattccctgagcattctccgtttttggaccagtccccaatcctcttcttcctttcctacccgttggtt |
111 |
Q |
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| T |
31608376 |
atcatcatcagaattttttggtggatttgttggtagctgaggattctccatttgcggatcagtccccaaaccttcgcttcctgtgctacccgttggtt |
31608473 |
T |
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