View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8491_low_55 (Length: 203)
Name: NF8491_low_55
Description: NF8491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8491_low_55 |
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Alignment Details
Target: chr8 (Bit Score: 82; Significance: 6e-39; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 31 - 148
Target Start/End: Original strand, 38304056 - 38304173
Alignment:
| Q |
31 |
attttttattagttggaaggcttagacatttaattaccccacctcttcattgagtctcacgtgtcacaaaacaaatggctaatgcatgcaataaggaggt |
130 |
Q |
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| T |
38304056 |
attttttatcaatgggaaagcttagacatttaattaccccacctcttcattcagtctcacgtgtcataaaacaaatggctaatgcatgcaataaggaggt |
38304155 |
T |
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| Q |
131 |
tgacgacagattcgacgg |
148 |
Q |
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| T |
38304156 |
tcatcacagattcgacgg |
38304173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 44166737 - 44166691
Alignment:
| Q |
93 |
gtcacaaaacaaatggctaatgcatgcaataaggaggttgacgacag |
139 |
Q |
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| T |
44166737 |
gtcacaaaacaaatggctaatgcatgcaataaggaggttgacgacag |
44166691 |
T |
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