View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8491_low_57 (Length: 202)
Name: NF8491_low_57
Description: NF8491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8491_low_57 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 4128636 - 4128466
Alignment:
| Q |
16 |
attaatgcagtggccaattgaagaattagaaaaactttgtggcaatcaaatcaatatcactggagaaacactccaaagtggatcaactcttaaagtaaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
4128636 |
attaatgcagtggccaattgaagagttagaaaaacttggtggcaatcaaatcaatatcactggagaaacactccaaagtggatcaactcttgaagtaaaa |
4128537 |
T |
|
| Q |
116 |
ggtatcactgcatcacaggtacgtaattaaattaatgcatgttgtgtgttttttcttatgaagcacgaacacg |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
4128536 |
ggtatcactgcatcacaggtacgtaattaaactaatgcatgtt--gtgttttttcctatgaagcacgaacacg |
4128466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 14 - 167
Target Start/End: Complemental strand, 4137251 - 4137098
Alignment:
| Q |
14 |
caattaatgcagtggccaattgaagaattagaaaaactttgtggcaatcaaatcaatatcactggagaaacactccaaagtggatcaactcttaaagtaa |
113 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4137251 |
caattaatgcaatggccaattgaagagttagaaaaacttcgtggcaaacaaatcaatatcaccggagaaacactccaaagtggatcaactcttgaagtaa |
4137152 |
T |
|
| Q |
114 |
aaggtatcactgcatcacaggtacgtaattaaattaatgcatgttgtgtgtttt |
167 |
Q |
| |
|
|||||||||||||||| ||||||| || |||| | || ||||||||||||||| |
|
|
| T |
4137151 |
aaggtatcactgcatctcaggtacacaactaaactgattcatgttgtgtgtttt |
4137098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 16 - 156
Target Start/End: Complemental strand, 4142321 - 4142181
Alignment:
| Q |
16 |
attaatgcagtggccaattgaagaattagaaaaactttgtggcaatcaaatcaatatcactggagaaacactccaaagtggatcaactcttaaagtaaaa |
115 |
Q |
| |
|
|||| ||||||||||||| ||||| |||||| |||| || ||||||||||||||||||| |||| ||||||| |||||||||||||||| |||||| | |
|
|
| T |
4142321 |
attactgcagtggccaatcgaagagttagaacaactacgttacaatcaaatcaatatcactagagagacactcctaagtggatcaactcttgaagtaata |
4142222 |
T |
|
| Q |
116 |
ggtatcactgcatcacaggtacgtaattaaattaatgcatg |
156 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
4142221 |
ggtatcactgcatctcaggtacgtaattaaatcgatgcatg |
4142181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University