View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8491_low_6 (Length: 637)
Name: NF8491_low_6
Description: NF8491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8491_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 295 - 610
Target Start/End: Complemental strand, 22385237 - 22384913
Alignment:
| Q |
295 |
cattgttcaaatggatctttgatgaatacataaatattttaccacaaaaacacacacagatcaaacattttctttatttnnnnnnnnt-taaaacaataa |
393 |
Q |
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| T |
22385237 |
cattgttcaaatggatctttgatgaatacataaattttttaccacaaaaacacacacagatcaaacattttctttatttaaaaaaaaaataaaacaataa |
22385138 |
T |
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| Q |
394 |
aagtaggaaaattaatcaagcactaggaaaggaacttgaatatgatcctagaaaaaatttgaaggagatttacattgtgcaatgcaaattgatatactca |
493 |
Q |
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| T |
22385137 |
aagtaggaaaattaatcaagcactaggaaaggaacttgaatatgatcctagaaaaaatttgaaggagatttacattgtgcaatgcatattgatatactca |
22385038 |
T |
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| Q |
494 |
taaaatagaaacattttacacagaa-aaaacacttttttggatacccttttccaagtg-------gaagaagaattgttgttgaagaaaagaaaagcaat |
585 |
Q |
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| T |
22385037 |
taaaatagaaacattttacacagaaaaaaacactttttaggatacccttttccaagtggaaaaaagaagaagaattgttgttgaagaaaagaaaagcaat |
22384938 |
T |
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| Q |
586 |
gaagaattttcaaacctagtgaata |
610 |
Q |
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| T |
22384937 |
gaagaattttcaaacctagtgaata |
22384913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 12 - 246
Target Start/End: Complemental strand, 22385523 - 22385285
Alignment:
| Q |
12 |
atggacatcagaagaacaagtattcaccccatgttgaagacactgttatcctgtttgaatctgaagcagatacatacccttcaatattttcaaaagtgac |
111 |
Q |
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|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22385523 |
atggacattagaagaacaactattcaccccatgttgaagacactgttatcctgtttgaatctgaagcagatacatacccttcaatattttcaaaagtgac |
22385424 |
T |
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| Q |
112 |
aaaaataaaatcaaataaataaa----gtattgttagttgattttcacaaacaaacaaaatccacaattgttacataaagatcatcattatccatacaca |
207 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22385423 |
aaaaataaaatcaaataaataaataaagtattgttagttgattttcacaaacaaacaaaatccacaattgttacataaagatcatcattatccatacaca |
22385324 |
T |
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| Q |
208 |
gtcatattaaatcaattaaagattataacaacaatattc |
246 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
22385323 |
gtcatattaaatcaattaaagattataacaacaatattc |
22385285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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