View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8491_low_9 (Length: 537)

Name: NF8491_low_9
Description: NF8491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8491_low_9
NF8491_low_9
[»] chr6 (11 HSPs)
chr6 (11-520)||(34969873-34970366)
chr6 (11-105)||(34952417-34952511)
chr6 (443-514)||(34329769-34329840)
chr6 (430-520)||(33344927-33345016)
chr6 (466-520)||(18991743-18991797)
chr6 (11-96)||(35029578-35029663)
chr6 (445-505)||(9815621-9815681)
chr6 (430-520)||(35121882-35121970)
chr6 (483-520)||(19638395-19638432)
chr6 (454-520)||(4337586-4337652)
chr6 (430-520)||(12174426-12174516)
[»] chr1 (5 HSPs)
chr1 (432-520)||(1240537-1240625)
chr1 (462-520)||(35405442-35405500)
chr1 (444-520)||(29062313-29062389)
chr1 (430-520)||(22667130-22667218)
chr1 (473-519)||(45385210-45385256)
[»] chr7 (6 HSPs)
chr7 (437-520)||(26914284-26914366)
chr7 (479-520)||(3351186-3351227)
chr7 (473-520)||(35812721-35812768)
chr7 (479-520)||(26448478-26448519)
chr7 (454-518)||(12177915-12177979)
chr7 (473-520)||(15133283-15133330)
[»] chr3 (3 HSPs)
chr3 (442-520)||(19149800-19149879)
chr3 (464-520)||(11365153-11365209)
chr3 (445-520)||(52704599-52704674)
[»] chr8 (3 HSPs)
chr8 (430-516)||(13236292-13236378)
chr8 (473-515)||(35480978-35481020)
chr8 (454-520)||(43872613-43872679)
[»] chr4 (6 HSPs)
chr4 (447-520)||(12320510-12320583)
chr4 (445-520)||(3643093-3643168)
chr4 (461-520)||(5627597-5627656)
chr4 (424-506)||(35372037-35372119)
chr4 (445-520)||(43515804-43515880)
chr4 (441-501)||(7853419-7853479)
[»] chr2 (4 HSPs)
chr2 (441-520)||(16547770-16547849)
chr2 (447-508)||(2886975-2887036)
chr2 (447-520)||(34909265-34909338)
chr2 (464-520)||(5163898-5163954)
[»] scaffold1173 (1 HSPs)
scaffold1173 (422-520)||(434-531)
[»] chr5 (1 HSPs)
chr5 (460-505)||(32257648-32257693)


Alignment Details
Target: chr6 (Bit Score: 345; Significance: 0; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 11 - 520
Target Start/End: Complemental strand, 34970366 - 34969873
Alignment:
Q  11 agattattctcatacttattatgttgtttggaaggcttaaaaaattcaacatggatggaggcaagccatggaaacttctctgattcatcatcaatttcac 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34970366 agatcattctcatacttattatgttgtttggaaggcttaaaaaattcaacatggatggaggcaagccatggaaacttctctgattcatcatcaatttcac 34970267  T
Q  111 atatcacttgtaaccaattatgtacaatgtaccttaagataaccaatgataattaattgtgtggaaagctcattccaaatattccatgcaatgtaagcac 210  Q
    |||||||||||                    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34970266 atatcacttgtg-------------------ccttaagataaccaatgaaaattaattgtgtggaaagctcattccaaatattccatgcaatgtaagcac 34970186  T
Q  211 ttcaatttctatatatgtatattatgcagataattctctgcaannnnnnnatgccaaaatacatattaaaagaacaacaatgctatttgcacgactc-tt 309  Q
    |||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||| |||||||||||| | ||    
T  34970185 ttcaatttctatatatgtatattatgcagataattctctgcaatttttttatgccaaaatacatattaaaagaacaacaatgttatttgcacgacacttt 34970086  T
Q  310 tttatagcaaagtcctcatgaattatcgtcgacccaattaaatcatgtaatgatctgacc--nnnnnnnnnntcatgtaatggtcggaaaacatgcagta 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||            ||||||||||||||||||||||| ||||    
T  34970085 tttatagcaaagtcctcatgaattatcgtcgacccaattaaatcatgtaatggtctgaccaaaaaaaataaatcatgtaatggtcggaaaacatggagta 34969986  T
Q  408 gtggcaaggttgatcttaaaaattttggagccatggacgaaacaacaaaatagtgcccttttcactattccaatatttttcttcttgcattttttgttgt 507  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34969985 gtggcaaggttgatctttaaaattttggagccatgaacgaaacaacaaaatagtgcccttttcactattccaatatttttcttcttgcattttttgttgt 34969886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 105
Target Start/End: Complemental strand, 34952511 - 34952417
Alignment:
Q  11 agattattctcatacttattatgttgtttggaaggcttaaaaaattcaacatggatggaggcaagccatggaaacttctctgattcatcatcaat 105  Q
    |||| ||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||  ||||||| ||||  |||||||| ||||||    
T  34952511 agatcattctcatatttgttatgttgtttggaaggcttaaaaaattcaatatggatggaggcaaagcatggaagcttcattgattcatgatcaat 34952417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 443 - 514
Target Start/End: Original strand, 34329769 - 34329840
Alignment:
Q  443 gacgaaacaacaaaatagtgcccttttcactattccaatatttttcttcttgcattttttgttgtaaaagat 514  Q
    |||||||||| |||||  ||||||||| | ||||| |||||||||||||||||||||||||||| |||||||    
T  34329769 gacgaaacaataaaatcatgcccttttaattattctaatatttttcttcttgcattttttgttgcaaaagat 34329840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 430 - 520
Target Start/End: Complemental strand, 33345016 - 33344927
Alignment:
Q  430 ttttggagccatggacgaaacaacaaaatagtgcccttttcactattccaatatttttcttcttgcattttttgttgtaaaagattcattt 520  Q
    |||||| ||| |||||||||||| ||| || ||||||||| | ||||| |||||||||||||| ||||||||||||| |||| ||||||||    
T  33345016 ttttggtgccctggacgaaacaataaatta-tgcccttttaattattcaaatatttttcttctagcattttttgttgcaaaatattcattt 33344927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 466 - 520
Target Start/End: Original strand, 18991743 - 18991797
Alignment:
Q  466 ttttcactattccaatatttttcttcttgcattttttgttgtaaaagattcattt 520  Q
    |||| |||||| ||||||||||||||||||||||||||||| | |||||||||||    
T  18991743 ttttaactatttcaatatttttcttcttgcattttttgttgcacaagattcattt 18991797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 35029663 - 35029578
Alignment:
Q  11 agattattctcatacttattatgttgtttggaaggcttaaaaaattcaacatggatggaggcaagccatggaaacttctctgattc 96  Q
    |||| ||||| |||||| |||||||| ||||||| || || |||||||||| |||||  || || |||||||||||||||||||||    
T  35029663 agatcattcttatacttgttatgttgcttggaagactcaagaaattcaacacggatgcgggtaatccatggaaacttctctgattc 35029578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 445 - 505
Target Start/End: Original strand, 9815621 - 9815681
Alignment:
Q  445 cgaaacaacaaaatagtgcccttttcactattccaatatttttcttcttgcattttttgtt 505  Q
    |||||||| ||||| |||||||||| | ||||| |||||| ||||||||||||||||||||    
T  9815621 cgaaacaataaaattgtgcccttttaattattctaatattattcttcttgcattttttgtt 9815681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 430 - 520
Target Start/End: Original strand, 35121882 - 35121970
Alignment:
Q  430 ttttggagccatggacgaaacaacaaaatagtgcccttttcactattccaatatttttcttcttgcattttttgttgtaaaagattcattt 520  Q
    |||||| ||| |||||||||||| ||| || ||||||||| | ||||| |||||||||||||| ||| ||||||||| |||| ||||||||    
T  35121882 ttttggtgccctggacgaaacaataaatta-tgcccttttaattattcaaatatttttcttctagca-tttttgttgcaaaatattcattt 35121970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 483 - 520
Target Start/End: Original strand, 19638395 - 19638432
Alignment:
Q  483 tttttcttcttgcattttttgttgtaaaagattcattt 520  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  19638395 tttttcttcttacattttttgttgtaaaagattcattt 19638432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 454 - 520
Target Start/End: Original strand, 4337586 - 4337652
Alignment:
Q  454 aaaatagtgcccttttcactattccaatatttttcttcttgcattttttgttgtaaaagattcattt 520  Q
    ||||| ||||| |||| | ||||| ||||  ||||||||| ||||||||||||||||||||| ||||    
T  4337586 aaaattgtgccattttaattattctaatagctttcttcttacattttttgttgtaaaagatttattt 4337652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 430 - 520
Target Start/End: Complemental strand, 12174516 - 12174426
Alignment:
Q  430 ttttggagccatggacgaaacaacaaaatagtgcccttttcactattccaatatttttcttcttgcattttttgttgtaaaagattcattt 520  Q
    |||||| | |||||||||||||| ||||| |||   ||||   |||| ||||||||| ||||||||| ||||||||  |||||||||||||    
T  12174516 ttttggtgtcatggacgaaacaataaaattgtgttgttttatttatttcaatattttccttcttgcagtttttgttacaaaagattcattt 12174426  T

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Target: chr1 (Bit Score: 49; Significance: 9e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 432 - 520
Target Start/End: Complemental strand, 1240625 - 1240537
Alignment:
Q  432 ttggagccatggacgaaacaacaaaatagtgcccttttcactattccaatatttttcttcttgcattttttgttgtaaaagattcattt 520  Q
    |||| ||| |||||||||||| ||||| |||||||||| | ||| |  ||||||||||||||||||||||||||| |||||||||||||    
T  1240625 ttggtgccttggacgaaacaataaaattgtgcccttttaattatcctgatatttttcttcttgcattttttgttgcaaaagattcattt 1240537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 462 - 520
Target Start/End: Complemental strand, 35405500 - 35405442
Alignment:
Q  462 gcccttttcactattccaatatttttcttcttgcattttttgttgtaaaagattcattt 520  Q
    |||||||| | ||||| |||||||||||||||||||||||||||| |||| ||||||||    
T  35405500 gcccttttaattattcaaatatttttcttcttgcattttttgttgcaaaatattcattt 35405442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 444 - 520
Target Start/End: Original strand, 29062313 - 29062389
Alignment:
Q  444 acgaaacaacaaaatagtgcccttttcactattccaatatttttcttcttgcattttttgttgtaaaagattcattt 520  Q
    ||||||||| |||||| ||| ||||| | || |||||||| |||||||||| ||||||||||| |||||||| ||||    
T  29062313 acgaaacaataaaataatgctcttttaattactccaatatatttcttcttgtattttttgttgcaaaagatttattt 29062389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 430 - 520
Target Start/End: Original strand, 22667130 - 22667218
Alignment:
Q  430 ttttggagccatggacgaaacaacaaaatagtgcccttttcactattccaatatttttcttcttgcattttttgttgtaaaagattcattt 520  Q
    |||||| |||||||| ||||||| ||| || | ||||||| | ||||| |||||||||||||||||||||||| ||| |||| ||||||||    
T  22667130 ttttggtgccatgga-gaaacaataaatta-tacccttttaattattcaaatatttttcttcttgcattttttattgcaaaatattcattt 22667218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 519
Target Start/End: Original strand, 45385210 - 45385256
Alignment:
Q  473 tattccaatatttttcttcttgcattttttgttgtaaaagattcatt 519  Q
    ||||| |||||||||| ||||| ||||||||||| ||||||||||||    
T  45385210 tattcaaatatttttcctcttgtattttttgttgcaaaagattcatt 45385256  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 437 - 520
Target Start/End: Original strand, 26914284 - 26914366
Alignment:
Q  437 gccatggacgaaacaacaaaatagtgcccttttcactattccaatatttttcttcttgcattttttgttgtaaaagattcattt 520  Q
    |||||| ||||||||| ||||| ||| |||||| | ||||  |||||||||||||||||||||||||||| |||| ||||||||    
T  26914284 gccatgtacgaaacaataaaat-gtgtccttttaattattttaatatttttcttcttgcattttttgttgcaaaatattcattt 26914366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 479 - 520
Target Start/End: Complemental strand, 3351227 - 3351186
Alignment:
Q  479 aatatttttcttcttgcattttttgttgtaaaagattcattt 520  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  3351227 aatatttttcttcttgcattttttgttgtaaaatattcattt 3351186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 473 - 520
Target Start/End: Complemental strand, 35812768 - 35812721
Alignment:
Q  473 tattccaatatttttcttcttgcattttttgttgtaaaagattcattt 520  Q
    |||||||||||| ||||||||||||||||||||| |||| ||||||||    
T  35812768 tattccaatattattcttcttgcattttttgttgcaaaatattcattt 35812721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 479 - 520
Target Start/End: Complemental strand, 26448519 - 26448478
Alignment:
Q  479 aatatttttcttcttgcattttttgttgtaaaagattcattt 520  Q
    ||||||||| |||||||||||||||||| |||||||||||||    
T  26448519 aatattttttttcttgcattttttgttgcaaaagattcattt 26448478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 518
Target Start/End: Complemental strand, 12177979 - 12177915
Alignment:
Q  454 aaaatagtgcccttttcactattccaatatttttcttcttgcattttttgttgtaaaagattcat 518  Q
    ||||| ||||||| || | ||||| |||| |||||||||| |||||||||||| |||||||||||    
T  12177979 aaaattgtgccctattaattattctaatagttttcttcttacattttttgttgcaaaagattcat 12177915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 473 - 520
Target Start/End: Original strand, 15133283 - 15133330
Alignment:
Q  473 tattccaatatttttcttcttgcattttttgttgtaaaagattcattt 520  Q
    ||||| ||||||||| ||||| ||||||||||||||||| ||||||||    
T  15133283 tattcaaatattttttttcttacattttttgttgtaaaatattcattt 15133330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 442 - 520
Target Start/End: Original strand, 19149800 - 19149879
Alignment:
Q  442 ggacgaaacaacaaaatagtgcccttttcactattccaata-tttttcttcttgcattttttgttgtaaaagattcattt 520  Q
    |||||||||||||||||   |||||||| | |||||||||| ||||| |||||||||||||| |||||||||||| ||||    
T  19149800 ggacgaaacaacaaaattacgcccttttaattattccaatatttttttttcttgcattttttattgtaaaagatttattt 19149879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 464 - 520
Target Start/End: Complemental strand, 11365209 - 11365153
Alignment:
Q  464 ccttttcactattccaatatttttcttcttgcattttttgttgtaaaagattcattt 520  Q
    |||||| | ||||| |||||||||||||||||||||||||||| |||| ||||||||    
T  11365209 ccttttaattattcaaatatttttcttcttgcattttttgttgcaaaatattcattt 11365153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 520
Target Start/End: Original strand, 52704599 - 52704674
Alignment:
Q  445 cgaaacaacaaaatagtgcccttttcactattccaatatttttcttcttgcattttttgttgtaaaagattcattt 520  Q
    ||||| || ||||| |||||||||| | ||||| |||||||||| | ||| ||||||||||| | |||||||||||    
T  52704599 cgaaagaaaaaaattgtgcccttttaattattctaatatttttcattttgtattttttgttgcacaagattcattt 52704674  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 430 - 516
Target Start/End: Complemental strand, 13236378 - 13236292
Alignment:
Q  430 ttttggagccatggacgaaacaacaaaatagtgcccttttcactattccaatatttttcttcttgcattttttgttgtaaaagattc 516  Q
    |||||| ||| |||| ||||||| |||||  |||| |||| | |||||||||||||||||||||||||| ||||||| |||| ||||    
T  13236378 ttttggtgccctggatgaaacaataaaattatgccattttaattattccaatatttttcttcttgcattatttgttgcaaaaaattc 13236292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 515
Target Start/End: Original strand, 35480978 - 35481020
Alignment:
Q  473 tattccaatatttttcttcttgcattttttgttgtaaaagatt 515  Q
    ||||| |||||||||||||||| ||||||||||| ||||||||    
T  35480978 tattcgaatatttttcttcttgtattttttgttgcaaaagatt 35481020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 454 - 520
Target Start/End: Complemental strand, 43872679 - 43872613
Alignment:
Q  454 aaaatagtgcccttttcactattccaatatttttcttcttgcattttttgttgtaaaagattcattt 520  Q
    ||||| || ||||||| | ||||| |||||||||||| ||| ||||||||||| | |||||||||||    
T  43872679 aaaattgtacccttttaattattctaatatttttctttttgtattttttgttgcacaagattcattt 43872613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 447 - 520
Target Start/End: Complemental strand, 12320583 - 12320510
Alignment:
Q  447 aaacaacaaaatagtgcccttttcactattccaatatttttcttcttgcattttttgttgtaaaagattcattt 520  Q
    |||||| ||||| |||| ||||| | |||||||||| |||||||||| |||||||||||| |||| ||||||||    
T  12320583 aaacaataaaattgtgctcttttaattattccaatagttttcttcttacattttttgttgcaaaatattcattt 12320510  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 445 - 520
Target Start/End: Original strand, 3643093 - 3643168
Alignment:
Q  445 cgaaacaacaaaatagtgcccttttcactattccaatatttttcttcttgcattttttgttgtaaaagattcattt 520  Q
    |||||||| ||||| ||| | |||| | |||||||||||||||||||||| ||||||||||| | || ||||||||    
T  3643093 cgaaacaataaaattgtgtcattttaattattccaatatttttcttcttggattttttgttgcacaaaattcattt 3643168  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 461 - 520
Target Start/End: Complemental strand, 5627656 - 5627597
Alignment:
Q  461 tgcccttttcactattccaatatttttcttcttgcattttttgttgtaaaagattcattt 520  Q
    ||||||||| | ||||| |||||||||||| ||||||||||||||| |||| ||||||||    
T  5627656 tgcccttttaattattcaaatatttttcttattgcattttttgttgcaaaatattcattt 5627597  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 424 - 506
Target Start/End: Original strand, 35372037 - 35372119
Alignment:
Q  424 taaaaattttggagccatggacgaaacaacaaaatagtgcccttttcactattccaatatttttcttcttgcattttttgttg 506  Q
    ||||| |||||| ||| ||||| |||||| ||| | ||||| |||| | ||||| ||||||||||||||| ||||||||||||    
T  35372037 taaaatttttggtgccctggacaaaacaataaagttgtgccattttaaatattctaatatttttcttcttacattttttgttg 35372119  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 445 - 520
Target Start/End: Original strand, 43515804 - 43515880
Alignment:
Q  445 cgaaacaacaaaatagtgcccttttcactattccaatatttttcttcttgcatttttt-gttgtaaaagattcattt 520  Q
    |||||||| ||||| ||||||||||   ||||| |||| |||||||||| |||||||| |||| |||||||||||||    
T  43515804 cgaaacaataaaattgtgcccttttagttattctaatagttttcttcttacatttttttgttgcaaaagattcattt 43515880  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 441 - 501
Target Start/End: Complemental strand, 7853479 - 7853419
Alignment:
Q  441 tggacgaaacaacaaaatagtgcccttttcactattccaatatttttcttcttgcattttt 501  Q
    |||||||||||| ||||| || ||||||| | |||| ||||| |||||||||| |||||||    
T  7853479 tggacgaaacaataaaattgtacccttttaattatttcaatagttttcttcttacattttt 7853419  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 441 - 520
Target Start/End: Complemental strand, 16547849 - 16547770
Alignment:
Q  441 tggacgaaacaacaaaatagtgcccttttcactattccaatatttttcttcttgcattttttgttgtaaaagattcattt 520  Q
    |||||||||||| ||||| ||| |||||| |   || ||||| |||||||||| |||||||||||||||||||| |||||    
T  16547849 tggacgaaacaataaaattgtgtccttttaatagtttcaatagttttcttcttacattttttgttgtaaaagatccattt 16547770  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 508
Target Start/End: Original strand, 2886975 - 2887036
Alignment:
Q  447 aaacaacaaaatagtgcccttttcactattccaatatttttcttcttgcattttttgttgta 508  Q
    |||||| ||||| || || |||| | ||||| |||| |||||||||||||||||||||||||    
T  2886975 aaacaataaaattgtacctttttaattattctaatacttttcttcttgcattttttgttgta 2887036  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 520
Target Start/End: Original strand, 34909265 - 34909338
Alignment:
Q  447 aaacaacaaaatagtgcccttttcactattccaatatttttcttcttgcattttttgttgtaaaagattcattt 520  Q
    |||||| |||||  || |||||| | |||| ||||| |||||||||| |||||||||||| |||| ||||||||    
T  34909265 aaacaataaaattttgtccttttaattatttcaataattttcttcttacattttttgttgcaaaatattcattt 34909338  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 464 - 520
Target Start/End: Complemental strand, 5163954 - 5163898
Alignment:
Q  464 ccttttcactattccaatatttttcttcttgcattttttgttgtaaaagattcattt 520  Q
    |||||| | |||| ||||| |||||||||| |||||||||||  |||||||||||||    
T  5163954 cctttttattatttcaatagttttcttcttacattttttgttacaaaagattcattt 5163898  T

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Target: scaffold1173 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold1173
Description:

Target: scaffold1173; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 422 - 520
Target Start/End: Complemental strand, 531 - 434
Alignment:
Q  422 cttaaaaattttggagccatggacgaaacaacaaaatagtgcccttttcactattccaatatttttcttcttgcattttttgttgtaaaagattcattt 520  Q
    ||||||| |||||| | | |||||||||| | ||| | |||||| ||| | ||||| |||||||||||||||||||||||| |||||||| ||| ||||    
T  531 cttaaaatttttggtgtcctggacgaaactataaatt-gtgcccctttaattattcaaatatttttcttcttgcattttttattgtaaaatattaattt 434  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 505
Target Start/End: Original strand, 32257648 - 32257693
Alignment:
Q  460 gtgcccttttcactattccaatatttttcttcttgcattttttgtt 505  Q
    |||||||||| | ||||||||| ||||| |||||||||||||||||    
T  32257648 gtgcccttttaattattccaatttttttgttcttgcattttttgtt 32257693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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