View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8492_high_12 (Length: 299)
Name: NF8492_high_12
Description: NF8492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8492_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 12 - 280
Target Start/End: Original strand, 43299189 - 43299444
Alignment:
| Q |
12 |
tcaaacttttcaattacgcccttattctatacgttatagttaagtgtttctttctaaattaggctatgaaattgattgaaaacagcttatgcacatgtct |
111 |
Q |
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| T |
43299189 |
tcaaacttttcaattacgcccttattctatacgttatagttaagtgtttctttctaaattaggctatgaaattgattgaaaacagcttatgcacatgtct |
43299288 |
T |
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| Q |
112 |
ttctactgagggccggtttagattgacgtctttgagcttatctagtgacatacatgttagaacattattgttccaacaataaacgcttgtgacactgttt |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43299289 |
ttctactgagggccggtttagattgacgtctttgagcttatctagtgacgtacatgttagaacattattgttccaacaataaatgcttgtgacactgttt |
43299388 |
T |
|
| Q |
212 |
gagacaacttgtaaaaacaacttatgacatgtttataatccactattagcttatttttcatgagctcac |
280 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43299389 |
gag-------------acaacttatgacatgtttataatccactattagcttatttttcatgagctcac |
43299444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 13220534 - 13220490
Alignment:
| Q |
205 |
actgtttgagacaacttgtaaaaacaacttatgacatgtttataa |
249 |
Q |
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| T |
13220534 |
actgtttgagagaacttataaaaacaacttatgacttgttcataa |
13220490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 31686324 - 31686378
Alignment:
| Q |
197 |
cttgtgacactgtttgagacaacttgtaaaaacaacttatgacatgtttataatc |
251 |
Q |
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| T |
31686324 |
cttgtgacattgtttgagagaacttatcaaaacaacttatgacaagtttataatc |
31686378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 25670547 - 25670599
Alignment:
| Q |
197 |
cttgtgacactgtttgagacaacttgtaaaaacaacttatgacatgtttataa |
249 |
Q |
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||||||| ||||||||||| ||||| | |||||||||||||||||||| |||| |
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| T |
25670547 |
cttgtgagactgtttgagaaaacttatgaaaacaacttatgacatgttaataa |
25670599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 249
Target Start/End: Complemental strand, 50016002 - 50015943
Alignment:
| Q |
190 |
ataaacgcttgtgacactgtttgagacaacttgtaaaaacaacttatgacatgtttataa |
249 |
Q |
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|||||| ||||||| ||||||||||| ||||| | |||| ||| |||||||||||||||| |
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| T |
50016002 |
ataaacacttgtgagactgtttgagagaacttatgaaaagaacgtatgacatgtttataa |
50015943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 243
Target Start/End: Original strand, 34707450 - 34707503
Alignment:
| Q |
190 |
ataaacgcttgtgacactgtttgagacaacttgtaaaaacaacttatgacatgt |
243 |
Q |
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|||| ||||||||| ||||||||||| ||||| | |||||||||| |||||||| |
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| T |
34707450 |
ataagcgcttgtgagactgtttgagagaacttttgaaaacaacttgtgacatgt |
34707503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 19395044 - 19395084
Alignment:
| Q |
209 |
tttgagacaacttgtaaaaacaacttatgacatgtttataa |
249 |
Q |
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||||||| ||||| ||||||||||||| ||||||||||||| |
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| T |
19395044 |
tttgagagaacttataaaaacaacttacgacatgtttataa |
19395084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 245
Target Start/End: Original strand, 8780385 - 8780433
Alignment:
| Q |
197 |
cttgtgacactgtttgagacaacttgtaaaaacaacttatgacatgttt |
245 |
Q |
| |
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||||||| |||||||||| | ||| ||||||||||||||||||||||| |
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| T |
8780385 |
cttgtgaatctgtttgagagagcttataaaaacaacttatgacatgttt |
8780433 |
T |
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