View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8492_high_14 (Length: 278)

Name: NF8492_high_14
Description: NF8492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8492_high_14
NF8492_high_14
[»] chr4 (13 HSPs)
chr4 (18-265)||(7885287-7885534)
chr4 (89-255)||(4320525-4320691)
chr4 (26-255)||(4344592-4344821)
chr4 (89-231)||(4123869-4124011)
chr4 (26-255)||(4361023-4361252)
chr4 (134-238)||(6753014-6753118)
chr4 (134-237)||(6651121-6651224)
chr4 (134-238)||(6545371-6545475)
chr4 (26-231)||(4335291-4335496)
chr4 (114-219)||(4133367-4133472)
chr4 (134-211)||(6498476-6498553)
chr4 (141-238)||(6758785-6758882)
chr4 (104-208)||(6761316-6761420)
[»] chr7 (3 HSPs)
chr7 (21-265)||(18935327-18935571)
chr7 (21-265)||(34724482-34724726)
chr7 (57-231)||(36213759-36213933)
[»] scaffold0294 (1 HSPs)
scaffold0294 (26-265)||(8796-9035)
[»] chr6 (15 HSPs)
chr6 (29-231)||(5344810-5345012)
chr6 (89-231)||(5181857-5181999)
chr6 (26-231)||(5066624-5066829)
chr6 (26-255)||(5096654-5096883)
chr6 (26-231)||(5073838-5074043)
chr6 (26-238)||(5350340-5350552)
chr6 (29-232)||(5128346-5128549)
chr6 (149-229)||(5102546-5102626)
chr6 (95-231)||(5383341-5383477)
chr6 (166-237)||(5243837-5243908)
chr6 (89-231)||(5176748-5176890)
chr6 (29-231)||(5354544-5354746)
chr6 (26-135)||(5425856-5425965)
chr6 (89-231)||(5278575-5278717)
chr6 (89-249)||(5396959-5397119)
[»] scaffold0813 (1 HSPs)
scaffold0813 (134-237)||(4750-4853)
[»] chr5 (1 HSPs)
chr5 (89-232)||(8877618-8877761)
[»] chr8 (1 HSPs)
chr8 (152-231)||(31175919-31175998)
[»] chr3 (5 HSPs)
chr3 (95-156)||(47986857-47986918)
chr3 (95-156)||(47996144-47996205)
chr3 (95-156)||(48005431-48005492)
chr3 (95-156)||(48014716-48014777)
chr3 (167-231)||(32411133-32411197)


Alignment Details
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 18 - 265
Target Start/End: Complemental strand, 7885534 - 7885287
Alignment:
Q  18 ttcgtgaacttccaagaagcatctataagttagactcggttaaaactctcattttgtctggatgcacaaaaattgaaaagttggaagaggatataaaaca 117  Q
    |||| ||||||||||| ||||| ||||||||||||||| | ||||| |||||| |||||||||| ||||||||||| ||||| |||||||||||| ||||    
T  7885534 ttcgagaacttccaaggagcatatataagttagactcgctgaaaacactcattctgtctggatgtacaaaaattgacaagttagaagaggatatagaaca 7885435  T
Q  118 aatgaaatctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgt 217  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||| ||||||||| |||||||||||||| ||||||||| |||    
T  7885434 aatgaaatctttaaccaccttggttgcggatgacactgctatcacaagagtgccctttgcagtagtaagatcaaaaagcattgcatttatttctctatgt 7885335  T
Q  218 ggctatgaaggatttgcacgtagagtgtttccttctattattcagtct 265  Q
    || ||| |||||| ||||||||||||||||||||||||||||||||||    
T  7885334 ggttataaaggatctgcacgtagagtgtttccttctattattcagtct 7885287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 89 - 255
Target Start/End: Complemental strand, 4320691 - 4320525
Alignment:
Q  89 attgaaaagttggaagaggatataaaacaaatgaaatctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagat 188  Q
    ||||| ||||||||||||||  |  |||||||| |||||||||||||| || ||||  |||| |||| ||| ||| |||| |||||| |||||||||| |    
T  4320691 attgacaagttggaagaggacttggaacaaatggaatctttaaccaccctgattgcaaataatactggtataacaaaagttcccttttcattagtaaggt 4320592  T
Q  189 aaaaaagcattgcatatatttctctctgtggctatgaaggatttgcacgtagagtgtttccttctat 255  Q
     ||||||||||| || ||||||||| ||||| |||||||||||  |||||   ||||||||||||||    
T  4320591 caaaaagcattggatttatttctctgtgtggatatgaaggattctcacgtgatgtgtttccttctat 4320525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 26 - 255
Target Start/End: Original strand, 4344592 - 4344821
Alignment:
Q  26 cttccaagaagcatctataagttagactcggttaaaactctcattttgtctggatgcacaaaaattgaaaagttggaagaggatataaaacaaatgaaat 125  Q
    |||||||||| |||||||| |||  | ||  | |||||||||||| | ||||||||   ||  ||||| ||||||||||||||  |  |||||||| |||    
T  4344592 cttccaagaaacatctatacgttgaaatctctgaaaactctcattctatctggatgtttaatgattgacaagttggaagaggacttggaacaaatggaat 4344691  T
Q  126 ctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatga 225  Q
    ||||||||||  || ||||  ||||||||||||| ||| |||| |||||| || ||||||| | |||| |||||| || ||||||| | ||||| |||||    
T  4344692 ctttaaccactctgattgcaaataacactgctataacaaaagtacccttttcagtagtaaggtcaaaacgcattggatttatttctttgtgtggatatga 4344791  T
Q  226 aggatttgcacgtagagtgtttccttctat 255  Q
    ||||||  |||||   ||||||||||||||    
T  4344792 aggattctcacgtgatgtgtttccttctat 4344821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 89 - 231
Target Start/End: Complemental strand, 4124011 - 4123869
Alignment:
Q  89 attgaaaagttggaagaggatataaaacaaatgaaatctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagat 188  Q
    ||||| ||||||||||||||  |  |||||||| |||||||||||||  || ||||  |||| |||||||| ||| ||||||||||| |  ||||||| |    
T  4124011 attgacaagttggaagaggagttggaacaaatggaatctttaaccactctgattgcaaataatactgctataacaaaagtgcccttttcggtagtaaggt 4123912  T
Q  189 aaaaaagcattgcatatatttctctctgtggctatgaaggatt 231  Q
     ||||||||||| || ||||||||| ||||| |||||||||||    
T  4123911 caaaaagcattggatttatttctctgtgtggatatgaaggatt 4123869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 255
Target Start/End: Original strand, 4361023 - 4361252
Alignment:
Q  26 cttccaagaagcatctataagttagactcggttaaaactctcattttgtctggatgcacaaaaattgaaaagttggaagaggatataaaacaaatgaaat 125  Q
    |||||||||| |||||||| |||  | ||  | |||||||||||| | ||||||||  |||  ||||| | ||||||||||||  |  |||||||| |||    
T  4361023 cttccaagaaacatctatacgttgaaatctctgaaaactctcattctatctggatgttcaatgattgacacgttggaagaggacttggaacaaatggaat 4361122  T
Q  126 ctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatga 225  Q
    ||||||||||  || ||||  ||||||||| ||| ||| |||| |||||| || | ||||||| |||| |||||| || ||||||| | ||||| |||||    
T  4361123 ctttaaccactctgattgcaaataacactggtataacaaaagtacccttttcaattgtaagatcaaaacgcattggatttatttctttgtgtggatatga 4361222  T
Q  226 aggatttgcacgtagagtgtttccttctat 255  Q
    ||||||  |||||   ||||||||||||||    
T  4361223 aggattctcacgtgatgtgtttccttctat 4361252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 6753014 - 6753118
Alignment:
Q  134 accttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaaggatttg 233  Q
    |||||| |||||||||| |||||||| ||| ||||||||||| || |||||||||  |||||||||| |||||||||| |  |||||| ||||||||||     
T  6753014 accttgattgcggataagactgctataacaaaagtgcccttttcaatagtaagattgaaaagcattggatatatttcttttcgtggctttgaaggatttt 6753113  T
Q  234 cacgt 238  Q
    |||||    
T  6753114 cacgt 6753118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 134 - 237
Target Start/End: Original strand, 6651121 - 6651224
Alignment:
Q  134 accttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaaggatttg 233  Q
    |||||| |||||||||| |||||||| ||| ||||||| ||| || ||||||||| || || ||||| |||||||||||| ||||||| ||||||||||     
T  6651121 accttgattgcggataagactgctataacaaaagtgccgttttcaatagtaagattaagaaacattggatatatttctctatgtggctttgaaggatttt 6651220  T
Q  234 cacg 237  Q
    ||||    
T  6651221 cacg 6651224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 134 - 238
Target Start/End: Complemental strand, 6545475 - 6545371
Alignment:
Q  134 accttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaaggatttg 233  Q
    |||||| |||||||||| |||||||| ||| ||||||||||| || |||| ||||  |||||||||| |||||||||| |  |||||| ||||||||||     
T  6545475 accttgattgcggataagactgctataacaaaagtgcccttttcaatagttagattgaaaagcattggatatatttcttttcgtggctttgaaggatttt 6545376  T
Q  234 cacgt 238  Q
    |||||    
T  6545375 cacgt 6545371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 26 - 231
Target Start/End: Original strand, 4335291 - 4335496
Alignment:
Q  26 cttccaagaagcatctataagttagactcggttaaaactctcattttgtctggatgcacaaaaattgaaaagttggaagaggatataaaacaaatgaaat 125  Q
    |||||||||| |||||||| |||  | ||  | |||||||||||| | || |||||   ||| ||||| ||||||||||||||  |  |||||||| |||    
T  4335291 cttccaagaaacatctatacgttgaagtctctgaaaactctcattctatcaggatgtttaaagattgacaagttggaagaggacttggaacaaatggaat 4335390  T
Q  126 ctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatga 225  Q
    ||||||||||  |  | || |||||||||| ||| ||| ||||||||||| || ||||||  | |||||||||||  ||||| ||| | ||||| |||||    
T  4335391 ctttaaccactctcatggcagataacactggtataacaaaagtgcccttttcagtagtaaagtcaaaaagcattggctatatctctttgtgtgggtatga 4335490  T
Q  226 aggatt 231  Q
    ||||||    
T  4335491 aggatt 4335496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 219
Target Start/End: Complemental strand, 4133472 - 4133367
Alignment:
Q  114 aacaaatgaaatctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctct 213  Q
    |||||||| | |||||||||||  || ||| |||||||||||| || ||| ||||||||||| || | | ||| | ||||||||||| ||||||||||||    
T  4133472 aacaaatggagtctttaaccactctgattgtggataacactgcaataacaaaagtgcccttttcagtcgcaaggtcaaaaagcattgaatatatttctct 4133373  T
Q  214 ctgtgg 219  Q
     |||||    
T  4133372 ttgtgg 4133367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 134 - 211
Target Start/End: Complemental strand, 6498553 - 6498476
Alignment:
Q  134 accttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttct 211  Q
    |||||| |||||||||| |||||||| ||| |||| |||||| || ||||||||| ||||||||||| ||| ||||||    
T  6498553 accttgattgcggataagactgctataacaaaagttcccttttcaatagtaagatcaaaaagcattggatacatttct 6498476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 238
Target Start/End: Original strand, 6758785 - 6758882
Alignment:
Q  141 ttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaaggatttgcacgt 238  Q
    |||||||||| ||||| || || ||||| ||| || || || |||||| ||||||||||  || ||||||||| ||||||| ||||||||||||||||    
T  6758785 ttgcggataagactgcaataacggaagtacccatttcaatattaagattaaaaagcattagatttatttctctgtgtggctttgaaggatttgcacgt 6758882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 208
Target Start/End: Original strand, 6761316 - 6761420
Alignment:
Q  104 gaggatataaaacaaatgaaatctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcat 203  Q
    ||||| ||| |||| ||| |||| || || |||||| |||||||||| |||||||| ||| ||||||||||| || | |||||||  ||||| |||| ||    
T  6761316 gaggacatagaacagatggaatcgttcacaaccttgattgcggataagactgctataacaaaagtgcccttttcaattgtaagattcaaaagtattggat 6761415  T
Q  204 atatt 208  Q
    |||||    
T  6761416 atatt 6761420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 21 - 265
Target Start/End: Original strand, 18935327 - 18935571
Alignment:
Q  21 gtgaacttccaagaagcatctataagttagactcggttaaaactctcattttgtctggatgcacaaaaattgaaaagttggaagaggatataaaacaaat 120  Q
    ||||||||||||||||||||||||| ||||| ||||| ||| |||||||||| |||||||| ||||||||||| |||||||||||||| ||| |||| ||    
T  18935327 gtgaacttccaagaagcatctataaattagagtcggtcaaagctctcattttatctggatgtacaaaaattgacaagttggaagaggacatagaacagat 18935426  T
Q  121 gaaatctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggc 220  Q
    || |||||| |||||| ||||||||||||| |||||| | |||  ||||||||||||| ||||||||| ||||||||||| || |||||| || |||||     
T  18935427 gacatctttgaccaccctggttgcggataagactgctgtaacaagagtgccctttgcagtagtaagatcaaaaagcattggatttatttcactgtgtgga 18935526  T
Q  221 tatgaaggatttgcacgtagagtgtttccttctattattcagtct 265  Q
    | ||||||||| |||||||  ||||||||||| ||||||||||||    
T  18935527 tttgaaggattagcacgtaatgtgtttccttcaattattcagtct 18935571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 265
Target Start/End: Complemental strand, 34724726 - 34724482
Alignment:
Q  21 gtgaacttccaagaagcatctataagttagactcggttaaaactctcattttgtctggatgcacaaaaattgaaaagttggaagaggatataaaacaaat 120  Q
    |||| |||||||||||||||||||| ||  | || || |||||||||||| |||||||||| ||||||||||| |||||||||||||| ||| |||||||    
T  34724726 gtgagcttccaagaagcatctataaattgaagtcagtaaaaactctcattgtgtctggatgtacaaaaattgacaagttggaagaggacatagaacaaat 34724627  T
Q  121 gaaatctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggc 220  Q
    ||  ||||| ||||   | ||||||||||| ||| || | |||   || || |||||| ||||||||| ||||||||||| || |||||| || |||||     
T  34724626 gacttctttgaccattctagttgcggataagacttctgtaacaagggttccatttgcagtagtaagatcaaaaagcattggatttatttcactttgtgga 34724527  T
Q  221 tatgaaggatttgcacgtagagtgtttccttctattattcagtct 265  Q
    | |||||||||||||||||  ||||| ||||| ||||||||||||    
T  34724526 tttgaaggatttgcacgtaatgtgttcccttcaattattcagtct 34724482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 57 - 231
Target Start/End: Complemental strand, 36213933 - 36213759
Alignment:
Q  57 ttaaaactctcattttgtctggatgcacaaaaattgaaaagttggaagaggatataaaacaaatgaaatctttaaccaccttggttgcggataacactgc 156  Q
    |||||||||||||| | ||||||||  |||| ||||| || ||||||||||| ||  |||| ||| ||||||||||||||||| ||||  ||||||||||    
T  36213933 ttaaaactctcattctttctggatgttcaaagattgacaaattggaagaggacatggaacagatggaatctttaaccaccttgattgcaaataacactgc 36213834  T
Q  157 tatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaaggatt 231  Q
     || |||  |||||| ||| || |||||||||  |||||||| || ||||| ||| | || ||||||||||||||    
T  36213833 aataacaagagtgccattttcagtagtaagatctaaaagcatcgcttatatatctttgtgcggctatgaaggatt 36213759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 265
Target Start/End: Complemental strand, 9035 - 8796
Alignment:
Q  26 cttccaagaagcatctataagttagactcggttaaaactctcattttgtctggatgcacaaaaattgaaaagttggaagaggatataaaacaaatgaaat 125  Q
    |||||||||||||||||||||||  | ||  | |||||||||||| | ||||| || | ||  ||||| |||||||||||||| ||| |||| ||| |||    
T  9035 cttccaagaagcatctataagttgaaatctctgaaaactctcattctttctgggtgtataatgattgacaagttggaagaggacatagaacagatggaat 8936  T
Q  126 ctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatga 225  Q
    ||||||||||  || |||| |||||||||||  | |||  |||||||||| || ||||||| | |||||| |||| |||||||||| | || ||| ||||    
T  8935 ctttaaccactctgcttgcagataacactgcattaacaagagtgcccttttcaatagtaaggtcaaaaagtattgtatatatttctttgtgcggccatga 8836  T
Q  226 aggatttgcacgtagagtgtttccttctattattcagtct 265  Q
    ||||||  |||||   |||||||| ||||| ||| |||||    
T  8835 aggattctcacgtgatgtgtttccatctatcattaagtct 8796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 5e-25; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 29 - 231
Target Start/End: Original strand, 5344810 - 5345012
Alignment:
Q  29 ccaagaagcatctataagttagactcggttaaaactctcattttgtctggatgcacaaaaattgaaaagttggaagaggatataaaacaaatgaaatctt 128  Q
    ||||||||||||||||||||  | ||  | |||||||||||| | || || ||   ||| ||||| ||||||||||||||  || |||||||||||||||    
T  5344810 ccaagaagcatctataagttgaattctctaaaaactctcattctttcgggttgtttaaagattgacaagttggaagaggacttagaacaaatgaaatctt 5344909  T
Q  129 taaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaagg 228  Q
    ||||||   || | ||  |||||||||| || ||| |||| ||||||  | ||||||| | ||||||||||| |||||||||||| ||||||||||||||    
T  5344910 taaccattctgatcgcaaataacactgcaataacaaaagttccctttttagtagtaaggtcaaaaagcattggatatatttctctgtgtggctatgaagg 5345009  T
Q  229 att 231  Q
    |||    
T  5345010 att 5345012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 89 - 231
Target Start/End: Complemental strand, 5181999 - 5181857
Alignment:
Q  89 attgaaaagttggaagaggatataaaacaaatgaaatctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagat 188  Q
    ||||| ||||||||||||||| |  |||||||||||||||||||||| ||| ||||  |||||||||| || |||  |||||| ||| || ||||||  |    
T  5181999 attgacaagttggaagaggatttggaacaaatgaaatctttaaccacattgattgcaaataacactgcaataacaagagtgccgttttcagtagtaaagt 5181900  T
Q  189 aaaaaagcattgcatatatttctctctgtggctatgaaggatt 231  Q
      ||||||||||||||||||||  | ||||| |||||||||||    
T  5181899 ccaaaagcattgcatatatttccttgtgtggatatgaaggatt 5181857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 231
Target Start/End: Complemental strand, 5066829 - 5066624
Alignment:
Q  26 cttccaagaagcatctataagttagactcggttaaaactctcattttgtctggatgcacaaaaattgaaaagttggaagaggatataaaacaaatgaaat 125  Q
    |||||||||||||||||||||||  | ||  |||||||||||||| | ||||| || | ||  ||||| ||||| |||||||| ||| |||||||| |||    
T  5066829 cttccaagaagcatctataagttgaaatctcttaaaactctcattctttctgggtgtataatgattgacaagttagaagaggacatagaacaaatggaat 5066730  T
Q  126 ctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatga 225  Q
    ||||||||||  || ||||  |||| ||||| || | |  | | |||||| || ||||||| | ||||||||||| ||| || ||| | || ||||||||    
T  5066729 ctttaaccactctgcttgcacataaaactgcaataaaaagaatacccttttcagtagtaaggtcaaaaagcattggatacatctctttgtgcggctatga 5066630  T
Q  226 aggatt 231  Q
    ||||||    
T  5066629 aggatt 5066624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 255
Target Start/End: Original strand, 5096654 - 5096883
Alignment:
Q  26 cttccaagaagcatctataagttagactcggttaaaactctcattttgtctggatgcacaaaaattgaaaagttggaagaggatataaaacaaatgaaat 125  Q
    |||||| ||||||||||||||||  | ||  | |||||||||||| | ||||| || | ||  |||||  ||||||||||||| ||| |||||||| |||    
T  5096654 cttccaggaagcatctataagttgaaatctctgaaaactctcattctttctgggtgtataatgattgacgagttggaagaggacatagaacaaatggaat 5096753  T
Q  126 ctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatga 225  Q
    | |||||||   || ||||  |||||||||  || | |  ||| |||||| || ||||||| | ||||||||||| ||| |||||||| |||||| ||||    
T  5096754 cattaaccattctgcttgcaaataacactggaataaaaagagtacccttttcagtagtaaggtcaaaaagcattggatacatttctctatgtggccatga 5096853  T
Q  226 aggatttgcacgtagagtgtttccttctat 255  Q
    ||||||| |||||   |||||||| |||||    
T  5096854 aggattttcacgtgatgtgtttccgtctat 5096883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 26 - 231
Target Start/End: Complemental strand, 5074043 - 5073838
Alignment:
Q  26 cttccaagaagcatctataagttagactcggttaaaactctcattttgtctggatgcacaaaaattgaaaagttggaagaggatataaaacaaatgaaat 125  Q
    ||||||||||| |||||||||||  | ||  | |||||||||||| | || || ||  |||  ||||| ||||||||||||||  || |||| |||| ||    
T  5074043 cttccaagaagtatctataagttgaaatctctaaaaactctcattctttccgggtgttcaatgattgacaagttggaagaggacttagaacagatgacat 5073944  T
Q  126 ctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatga 225  Q
    ||||||||||  || | ||  ||||||| || || |||  |||||||||| || ||||||| |  |||||||||| |||||||||| | || ||||||||    
T  5073943 ctttaaccactctgatagcaaataacaccgcaataacaagagtgcccttttcagtagtaaggtcgaaaagcattggatatatttctttgtgcggctatga 5073844  T
Q  226 aggatt 231  Q
    ||||||    
T  5073843 aggatt 5073838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 238
Target Start/End: Original strand, 5350340 - 5350552
Alignment:
Q  26 cttccaagaagcatctataagttagactcggttaaaactctcattttgtctggatgcacaaaaattgaaaagttggaagaggatataaaacaaatgaaat 125  Q
    |||||||||||||||| ||||||  | ||  | |||||||||||| | || || || | ||  ||||| |||||||||||||| ||| |||||||| |||    
T  5350340 cttccaagaagcatctttaagttgaaatctctcaaaactctcattctttcagggtgtataatgattgacaagttggaagaggacatagaacaaatggaat 5350439  T
Q  126 ctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatga 225  Q
    ||||||||||  || ||||  |||| ||||| || | |  | | |||||| || ||||||| | ||||||||||| ||| || ||| | || ||||||||    
T  5350440 ctttaaccactctgcttgcacataaaactgcaataaaaagaatacccttttcagtagtaaggtcaaaaagcattggatacatctctttgtgcggctatga 5350539  T
Q  226 aggatttgcacgt 238  Q
    ||||||| |||||    
T  5350540 aggattttcacgt 5350552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 232
Target Start/End: Complemental strand, 5128549 - 5128346
Alignment:
Q  29 ccaagaagcatctataagttagactcggttaaaactctcattttgtctggatgcacaaaaattgaaaagttggaagaggatataaaacaaatgaaatctt 128  Q
    ||||||||||||||||||||  | ||  | |||||||||||| | ||||| || | ||  ||||| ||||||||||||||  |  |||||||| |||| |    
T  5128549 ccaagaagcatctataagttgaaatctttgaaaactctcattctttctggttgtataatgattgacaagttggaagaggacttggaacaaatggaatcat 5128450  T
Q  129 taaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaagg 228  Q
    |||| ||  || ||||  |||||||||| || | |  ||| |||||| || ||||||| | ||||||||||| |||||| ||||| || ||| |||||||    
T  5128449 taacaactctgcttgcaaataacactgcaataaaaagagtacccttttcagtagtaaggtcaaaaagcattggatatatctctctgtgcggccatgaagg 5128350  T
Q  229 attt 232  Q
    ||||    
T  5128349 attt 5128346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 229
Target Start/End: Complemental strand, 5102626 - 5102546
Alignment:
Q  149 aacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaagga 229  Q
    |||||||| || |||  |||||||||| || ||||||| | ||||||||||| |||||| ||||| |||||||||||||||    
T  5102626 aacactgcaataacaacagtgcccttttcagtagtaaggtcaaaaagcattggatatatctctctatgtggctatgaagga 5102546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 231
Target Start/End: Original strand, 5383341 - 5383477
Alignment:
Q  95 aagttggaagaggatataaaacaaatgaaatctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaa 194  Q
    |||||||||||||| ||| |||||||| |||||||||| || ||| |||| ||||||||||| || |||  ||| ||| || || |  |||| | |||||    
T  5383341 aagttggaagaggacatagaacaaatggaatctttaactactttgcttgcagataacactgcaataacaagagttcccctttcaattttaaggtcaaaaa 5383440  T
Q  195 gcattgcatatatttctctctgtggctatgaaggatt 231  Q
    | |||| |||||||||| | || ||| ||||||||||    
T  5383441 gtattgtatatatttctttgtgcggccatgaaggatt 5383477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 237
Target Start/End: Complemental strand, 5243908 - 5243837
Alignment:
Q  166 agtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaaggatttgcacg 237  Q
    |||||||||| || ||||||| | ||||||||| | |||||||||| | |||||||||||||||||| ||||    
T  5243908 agtgcccttttcagtagtaaggtcaaaaagcatcggatatatttctttgtgtggctatgaaggattttcacg 5243837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 231
Target Start/End: Original strand, 5176748 - 5176890
Alignment:
Q  89 attgaaaagttggaagaggatataaaacaaatgaaatctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagat 188  Q
    ||||| ||||||||||||||  |  |||||||| |||||||||| ||  || ||||  |||||||||| || |||  |||||||||  || ||||||| |    
T  5176748 attgacaagttggaagaggacttggaacaaatggaatctttaactactctgcttgcaaataacactgcaataacaagagtgcccttgtcaatagtaaggt 5176847  T
Q  189 aaaaaagcattgcatatatttctctctgtggctatgaaggatt 231  Q
     ||||||||||| ||| || ||| | || ||||||||||||||    
T  5176848 caaaaagcattggatacatctctttgtgcggctatgaaggatt 5176890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 231
Target Start/End: Complemental strand, 5354746 - 5354544
Alignment:
Q  29 ccaagaagcatctataagttagactcggttaaaactctcattttgtctggatgcacaaaaattgaaaagttggaagaggatataaaacaaatgaaatctt 128  Q
    |||||||||||||| |||||  | ||  | |||||||||||| | ||||| || | |||  | || ||||||||||||||  |  ||||| || ||||||    
T  5354746 ccaagaagcatctacaagttgaaatctttgaaaactctcattctttctggttgtaaaaagttagacaagttggaagaggacttggaacaattggaatctt 5354647  T
Q  129 taaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaagg 228  Q
    |||||||| || ||||  || ||||||| || |||  ||| |||||  || |||| || |  |||||||||| |||||||||| | ||||||||||||||    
T  5354646 taaccaccctgcttgcaaatgacactgcaataacaagagtacccttctcaatagttagttccaaaagcattggatatatttctttatgtggctatgaagg 5354547  T
Q  229 att 231  Q
    |||    
T  5354546 att 5354544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 5425856 - 5425965
Alignment:
Q  26 cttccaagaagcatctataagttagactcggttaaaactctcattttgtctggatgcacaaaaattgaaaagttggaagaggatataaaacaaatgaaat 125  Q
    |||||||||| ||||||||||||  | ||  | |||||||||||| | ||||| ||   ||  ||||| |||||||||||||| ||| |||||||| |||    
T  5425856 cttccaagaaacatctataagttgaaatctctgaaaactctcattctttctgggtgtgtaatgattgacaagttggaagaggacatagaacaaatggaat 5425955  T
Q  126 ctttaaccac 135  Q
    ||||||||||    
T  5425956 ctttaaccac 5425965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 231
Target Start/End: Original strand, 5278575 - 5278717
Alignment:
Q  89 attgaaaagttggaagaggatataaaacaaatgaaatctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagat 188  Q
    ||||| ||||||||||||||  |  |||||||| |||||||||| ||  || ||||  |||||||||| || |||  |||||||||  |  ||||||| |    
T  5278575 attgacaagttggaagaggacttggaacaaatggaatctttaactactctgcttgcaaataacactgcaataacaagagtgcccttgtctatagtaaggt 5278674  T
Q  189 aaaaaagcattgcatatatttctctctgtggctatgaaggatt 231  Q
     ||||||||||| ||| || ||| | || ||||||||||||||    
T  5278675 caaaaagcattggatacatctctttgtgcggctatgaaggatt 5278717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 249
Target Start/End: Original strand, 5396959 - 5397119
Alignment:
Q  89 attgaaaagttggaagaggatataaaacaaatgaaatctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagat 188  Q
    ||||| || |||||||| ||| |  |||| ||| ||||||||||||||||||||||  |||||||||| || | |  |||||| ||| || |  |||| |    
T  5396959 attgacaaattggaagaagatttggaacagatggaatctttaaccaccttggttgcaaataacactgcaataaaaagagtgccgttttcaattttaaggt 5397058  T
Q  189 aaaaaagcattgcatatatttctctctgtggctatgaaggatttgcacgtagagtgtttcc 249  Q
     ||||||||||| || ||| ||| | || || |||||||||||| || ||  |||||||||    
T  5397059 taaaaagcattggatttatctctttgtgcggatatgaaggattttcatgtgaagtgtttcc 5397119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0813 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0813
Description:

Target: scaffold0813; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 134 - 237
Target Start/End: Complemental strand, 4853 - 4750
Alignment:
Q  134 accttggttgcggataacactgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaaggatttg 233  Q
    |||||| |||||||||| |||||||| ||| ||||||| ||| || ||||||||| || || ||||| |||||||||||| ||||||| ||||||||||     
T  4853 accttgattgcggataagactgctataacaaaagtgccgttttcaatagtaagattaagaaacattggatatatttctctatgtggctttgaaggatttt 4754  T
Q  234 cacg 237  Q
    ||||    
T  4753 cacg 4750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 89 - 232
Target Start/End: Original strand, 8877618 - 8877761
Alignment:
Q  89 attgaaaagttggaagaggatataaaacaaatgaaatctttaaccaccttggttgcggataacactgctatcacagaagtgccctttgcattagtaagat 188  Q
    ||||| |||||||| |||||  || |||| |||||||||||||||||  || ||||  |||||||||| || | |  ||| || ||| |||||||||| |    
T  8877618 attgacaagttggaggaggacttagaacagatgaaatctttaaccactctgcttgcaaataacactgcaataaaaagagtaccattttcattagtaaggt 8877717  T
Q  189 aaaaaagcattgcatatatttctctctgtggctatgaaggattt 232  Q
     ||||||||||| |||||||||| | || |||||||||||||||    
T  8877718 caaaaagcattggatatatttctttgtgcggctatgaaggattt 8877761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 231
Target Start/End: Original strand, 31175919 - 31175998
Alignment:
Q  152 actgctatcacagaagtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaaggatt 231  Q
    |||| ||||| | ||||||||| | || ||| ||||| |||||||||||||||||| ||||| ||||| |||||||||||    
T  31175919 actggtatcaaacaagtgccctattcaatagcaagatcaaaaagcattgcatatatatctctatgtggatatgaaggatt 31175998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 47986918 - 47986857
Alignment:
Q  95 aagttggaagaggatataaaacaaatgaaatctttaaccaccttggttgcggataacactgc 156  Q
    |||||||||||||| ||  || |||||||||||||||| || ||||||||  ||||||||||    
T  47986918 aagttggaagaggacatggaataaatgaaatctttaactactttggttgcaaataacactgc 47986857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 47996205 - 47996144
Alignment:
Q  95 aagttggaagaggatataaaacaaatgaaatctttaaccaccttggttgcggataacactgc 156  Q
    |||||||||||||| ||  || |||||||||||||||| || ||||||||  ||||||||||    
T  47996205 aagttggaagaggacatggaataaatgaaatctttaactactttggttgcaaataacactgc 47996144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 48005492 - 48005431
Alignment:
Q  95 aagttggaagaggatataaaacaaatgaaatctttaaccaccttggttgcggataacactgc 156  Q
    |||||||||||||| ||  || |||||||||||||||| || ||||||||  ||||||||||    
T  48005492 aagttggaagaggacatggaataaatgaaatctttaactactttggttgcaaataacactgc 48005431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 48014777 - 48014716
Alignment:
Q  95 aagttggaagaggatataaaacaaatgaaatctttaaccaccttggttgcggataacactgc 156  Q
    |||||||||||||| ||  || |||||||||||||||| || ||||||||  ||||||||||    
T  48014777 aagttggaagaggacatggaataaatgaaatctttaactactttggttgcaaataacactgc 48014716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 32411197 - 32411133
Alignment:
Q  167 gtgccctttgcattagtaagataaaaaagcattgcatatatttctctctgtggctatgaaggatt 231  Q
    ||||||| | || |||||||||  |||||||| |||||||| ||||| ||||| |||||||||||    
T  32411197 gtgccctgttcaatagtaagatcgaaaagcatcgcatatatatctctatgtggatatgaaggatt 32411133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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