View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8492_high_15 (Length: 273)
Name: NF8492_high_15
Description: NF8492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8492_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 36 - 269
Target Start/End: Complemental strand, 4654810 - 4654572
Alignment:
| Q |
36 |
tgaagtgcattagtattattatttccttcctatggttttcaattgataaaaagaaatgagtgttttcctatccacaattat-----cctaattgctcccc |
130 |
Q |
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| T |
4654810 |
tgaagtgcattagtattattatttccttcctatggttttcaattgataaaaagaaatgagtgttttcctatccacaattatgtgatcctaattgctcccc |
4654711 |
T |
|
| Q |
131 |
aaggaaatcatttgaccatttcaatcatcagtctcaagtgctgttttatggaaatttcccttcctactcaatgtataagataataataaataaagcaact |
230 |
Q |
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| T |
4654710 |
aaggaaatcatttgaccatttcaatgatcagtctcaagtgctgttttatggaaatttcccttcctactcaatgtataagataataataaataaagcaact |
4654611 |
T |
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| Q |
231 |
tctacgtatcattcatattaatctattttcttctcactc |
269 |
Q |
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| T |
4654610 |
tctacgtaccattcaaattgatctattttcttcacactc |
4654572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 66 - 263
Target Start/End: Complemental strand, 4644987 - 4644774
Alignment:
| Q |
66 |
tatggttttcaattgataaaa-agaaatgagtgttttcctatc--cacaatta-----tcctaattgctccccaaggaaatcatttgaccatttcaatca |
157 |
Q |
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| T |
4644987 |
tatggttttgaatt-ataaaacagaaatgagagttttcctatctccacaattacgtgatcctaattgcttcccaaggagatcatttgaccatttcaatga |
4644889 |
T |
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| Q |
158 |
tcagtctcaagtgctgttttatggaaatttcccttccta---ctcaatgtataa-----gataataataaataaa-gcaacttctacgtatcattcatat |
248 |
Q |
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| T |
4644888 |
tcagtctcaagtgttgttttatggaaatttcccttcctacctctaaatgtatcaaatctaataataataaataaatgcaacttctacgtaccattcaaat |
4644789 |
T |
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| Q |
249 |
taatctattttcttc |
263 |
Q |
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|||| ||| |||||| |
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| T |
4644788 |
taatgtatcttcttc |
4644774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 4674601 - 4674521
Alignment:
| Q |
36 |
tgaagtgcattagtattattatttccttcctatggttttcaattgataaaaagaaatgagtgttttcctatccacaattat |
116 |
Q |
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| T |
4674601 |
tgaagtgcattagtatttttatttccttcgtatgattttcagttagtaaaaagaaatgagtgttttcctatccacaattat |
4674521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 263
Target Start/End: Complemental strand, 4638051 - 4637936
Alignment:
| Q |
157 |
atcagtctcaagtgctgttttatggaaatttcccttcctac---tcaatgtat--aag---ataataataaataaa-gcaacttctacgtatcattcata |
247 |
Q |
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|||| ||||||||| |||||||||| ||||||| ||||||| ||||||||| || ||||||||||||||| |||||||||||||| |||||| | |
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| T |
4638051 |
atcactctcaagtgttgttttatgggaatttcctttcctacctctcaatgtatctaatctaataataataaataaatgcaacttctacgtaccattcaaa |
4637952 |
T |
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| Q |
248 |
ttaatctattttcttc |
263 |
Q |
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||||| ||| |||||| |
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| T |
4637951 |
ttaatgtatcttcttc |
4637936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 238
Target Start/End: Complemental strand, 4673913 - 4673828
Alignment:
| Q |
157 |
atcagtctcaagtgctgttttatggaaatttcccttccta---ctcaatgtataagataataataaataaa-gcaacttctacgta |
238 |
Q |
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|||||||||||||| | |||||| |||| |||||||||| ||||||||||| |||||||||| |||| |||||||||||||| |
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| T |
4673913 |
atcagtctcaagtgtttttttataaaaatctcccttcctacctctcaatgtatataataataataattaaaggcaacttctacgta |
4673828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 155
Target Start/End: Complemental strand, 4674033 - 4673929
Alignment:
| Q |
55 |
tatttccttcctatggttttcaattgataaaa-agaaatgagtgttttcctatccacaattat-----cctaattgctccccaaggaaatcatttgacca |
148 |
Q |
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|||||| ||| ||||||||| |||| |||||| |||||||| |||| ||||||||||||||| ||||||| || || |||||||||||||||||| |
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| T |
4674033 |
tatttctttcgtatggtttttaatt-ataaaacagaaatgaaagttt-cctatccacaattatgtgatcctaatttcttcctaaggaaatcatttgacca |
4673936 |
T |
|
| Q |
149 |
tttcaat |
155 |
Q |
| |
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||||||| |
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| T |
4673935 |
tttcaat |
4673929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 4795127 - 4795057
Alignment:
| Q |
44 |
attagtattattatttccttcctatggttttcaattgataaaaagaaatgagtgttttcctatccacaattat |
116 |
Q |
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||||||||| |||||||||| ||||||||| ||| ||||||| ||| ||||||||||||||||| ||||| |
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| T |
4795127 |
attagtatttctatttccttcgtatggtttttcattaataaaaa--aattagtgttttcctatccacgattat |
4795057 |
T |
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