View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8492_high_6 (Length: 388)
Name: NF8492_high_6
Description: NF8492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8492_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 13 - 372
Target Start/End: Original strand, 31137047 - 31137405
Alignment:
| Q |
13 |
agtttggagttcctattgctctcacaagattttcaattatacctttatattcatcagtttctcctgcagagttaacaaaatccataggnnnnnnnngtgt |
112 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
31137047 |
agtttggtgttcctattgctctcacaagattttcaattatacctttatattcatcagtttctcctgcagagttaacaaaatccatag-aaaaaaatgcgt |
31137145 |
T |
|
| Q |
113 |
ttgacaaaaaattcaatgaagtcttaaaaacagcttttccaacatcaacagcttcaccaattaagctacttctatcaatatcacataaaagctcttgaag |
212 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
31137146 |
ttgacaaaaaattcaatgaagttttaaaaacagcttttccaacatcaacagcttccccaattaagttacttctatcaatatcacataaaagctcttgaag |
31137245 |
T |
|
| Q |
213 |
cttcttacacctaagtgcatggctagcatcaagagttttgctagaaaacaaatggtttttgcatatttttcttaggtttctccaaagatcgcaaaccggc |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31137246 |
cttcttacacctaagtgcatggctagcatcaagagttttgctagaaaacaaatggtttttgcatatttttcttaggtctctccaaagatcgcaaaccggc |
31137345 |
T |
|
| Q |
313 |
ataaacggtaagctaaaatgatcatgattgaaaactgtaacagcttgagggactgttctg |
372 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31137346 |
ataaagggtaagctaaaatgatcatgattgaaaactgtaacagcttgagggactgttctg |
31137405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 13 - 372
Target Start/End: Complemental strand, 31151992 - 31151634
Alignment:
| Q |
13 |
agtttggagttcctattgctctcacaagattttcaattatacctttatattcatcagtttctcctgcagagttaacaaaatccataggnnnnnnnngtgt |
112 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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|
| T |
31151992 |
agtttggtgttcctattgctctcacaagattttcaattatacctttatattcatcagtttctcctgcagagttaacaaaatccatag-aaaaaaatgcgt |
31151894 |
T |
|
| Q |
113 |
ttgacaaaaaattcaatgaagtcttaaaaacagcttttccaacatcaacagcttcaccaattaagctacttctatcaatatcacataaaagctcttgaag |
212 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
31151893 |
ttgacaaaaaattcaatgaagttttaaaaacagcttttccaacatcaacagcttccccaattaagttacttctatcaatatcacataaaagctcttgaag |
31151794 |
T |
|
| Q |
213 |
cttcttacacctaagtgcatggctagcatcaagagttttgctagaaaacaaatggtttttgcatatttttcttaggtttctccaaagatcgcaaaccggc |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||| |
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|
| T |
31151793 |
cttcttacacctaagtgcatggctagcatcaagagttttgctagaaaacaaatggtttttgcatatttttcgtaagtctctccaaagatcgcaaaccggc |
31151694 |
T |
|
| Q |
313 |
ataaacggtaagctaaaatgatcatgattgaaaactgtaacagcttgagggactgttctg |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31151693 |
ataaacggtaagctaaaatgatcatgattgaaaactgtaacagcttgagggactgttctg |
31151634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 331
Target Start/End: Complemental strand, 31130145 - 31129828
Alignment:
| Q |
13 |
agtttggagttcctattgctctcacaagattttcaattatacctttatattcatcagtttctcctgcagagttaacaaaatccataggnnnnnnnngtgt |
112 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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|
| T |
31130145 |
agtttggagttcctattgccctcacaaggttttcaactatacctttatattcatcagtttcacctgcagagttaacaaaatccatag-agaaaaaagtgt |
31130047 |
T |
|
| Q |
113 |
ttgacaaaaaattcaatgaagtcttaaaaacagcttttccaacatcaacagcttcaccaattaagctacttctatcaatatcacataaaagctcttgaag |
212 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||| ||| | || ||||||| ||||||||||||||| |
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|
| T |
31130046 |
ttgacaaaaaattcaatgaagtcttaaaagcagctcttcctacatcaacagcttcaccaattaagctgcttttttctatatcacttaaaagctcttgaag |
31129947 |
T |
|
| Q |
213 |
cttcttacacctaagtgcatggctagcatcaagagttttgctagaaaacaaatggtttttgcatatttttcttaggtttctccaaagatcgcaaaccggc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||| ||| |
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|
| T |
31129946 |
cttcttacacctaagtgcatggctagcatcaagagtttggctagaaaacaattggtttttgcatatttttcttaggtctctccaaagatcacaaactggc |
31129847 |
T |
|
| Q |
313 |
ataaacggtaagctaaaat |
331 |
Q |
| |
|
||||| ||||||||||||| |
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| T |
31129846 |
ataaagggtaagctaaaat |
31129828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 13 - 339
Target Start/End: Original strand, 24468420 - 24468745
Alignment:
| Q |
13 |
agtttggagttcctattgctctcacaagattttcaattatacctttatattcatcagtttctcctgcagagttaacaaaatccataggnnnnnnnngtgt |
112 |
Q |
| |
|
||||||| |||||||||||| ||| |||| |||||| |||| ||||||| ||||||||||| ||||||||||||||||||||||| || |||| |
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|
| T |
24468420 |
agtttggtgttcctattgctgtcataagactttcaactatatctttatactcatcagtttcacctgcagagttaacaaaatccat-ggagaaaaaagtgt |
24468518 |
T |
|
| Q |
113 |
ttgacaaaaaattcaatgaagtcttaaaaacagcttttccaacatcaacagcttcaccaattaagctacttctatcaatatcacataaaagctcttgaag |
212 |
Q |
| |
|
||||||||| |||||| ||||||||||| ||||||| ||||||| || |||||||||| ||||||||||||||||||||||||||||||||||| || |
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|
| T |
24468519 |
ttgacaaaacattcaacaaagtcttaaaagcagctttctcaacatccactgcttcaccaaccaagctacttctatcaatatcacataaaagctcttgcag |
24468618 |
T |
|
| Q |
213 |
cttcttacacctaagtgcatggctagcatcaagagttttgctagaaaacaaatggtttttgcatatttttcttaggtttctccaaagatcgcaaaccggc |
312 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||| | | ||| |
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|
| T |
24468619 |
cttcttacacctaagttcattgctagcatcaagagttttgttagaaaacaaattgtttttgcatatttttcttaggtctctccaaagatttgacattggc |
24468718 |
T |
|
| Q |
313 |
ataaacggtaagctaaaatgatcatga |
339 |
Q |
| |
|
||||| |||||||||||||| |||||| |
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|
| T |
24468719 |
ataaatggtaagctaaaatgttcatga |
24468745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 15 - 332
Target Start/End: Original strand, 24484921 - 24485237
Alignment:
| Q |
15 |
tttggagttcctattgctctcacaagattttcaattatacctttatattcatcagtttctcctgcagagttaacaaaatccataggnnnnnnnngtgttt |
114 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||| ||||||| ||||||||||| |||| ||||||||||||||||||| |||||| |
|
|
| T |
24484921 |
tttggtgttcctattgctctcacaagattttcaacaatatctttatactcatcagtttcacctgtggagttaacaaaatccatag-agaaaaaagtgttt |
24485019 |
T |
|
| Q |
115 |
gacaaaaaattcaatgaagtcttaaaaacagcttttccaacatcaacagcttcaccaattaagctacttctatcaatatcacataaaagctcttgaagct |
214 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||| || |||| || | ||||||| |||||||||||||||| ||||||||||||||||| |
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|
| T |
24485020 |
gacaaaaaattcaatgaagtcttaaaagtagctcttccaacatctactgctttacaagttaagctgcttctatcaatatcacttaaaagctcttgaagct |
24485119 |
T |
|
| Q |
215 |
tcttacacctaagtgcatggctagcatcaagagttttgctagaaaacaaatggtttttgcatatttttcttaggtttctccaaagatcgcaaaccggcat |
314 |
Q |
| |
|
|||||||||||||| ||| ||||||||||| |||||| |||||||||||||||||||| ||| |||| |||||| |||||||||||| |||| ||||| |
|
|
| T |
24485120 |
tcttacacctaagttcattactagcatcaagtgttttgttagaaaacaaatggtttttgtataatttttttaggtctctccaaagatctgaaactggcat |
24485219 |
T |
|
| Q |
315 |
aaacggtaagctaaaatg |
332 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
24485220 |
aaagggtaagctaaaatg |
24485237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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