View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8492_high_9 (Length: 325)
Name: NF8492_high_9
Description: NF8492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8492_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 16 - 315
Target Start/End: Complemental strand, 41012785 - 41012486
Alignment:
| Q |
16 |
caaatatcagtagttttatcactttgtttctatttatttgtttatttcttctcattgtgttatttcagataataagttatgctgataagttacagaacaa |
115 |
Q |
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| T |
41012785 |
caaatatcagtagttttatcactttgtttctatttatttgtttatttcttctcattgtgttatttcagataataagttatgctgataagttacagaacaa |
41012686 |
T |
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| Q |
116 |
agcaatccttttgattcacttttcagctcgttacacagtagaggtatgacattattgtttttggctcctgagaagaataaatcacccctcccaaaacctt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41012685 |
agcaatccttttgattcacttttcagctcgttacacagtagaggtatgacattattgtttttggctcctgagaagaataaatcacccctcccaaaacctt |
41012586 |
T |
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| Q |
216 |
gttctgagtgagcatattagtaactacagtcatgcgatcggtgtcatttgatgaaaatctaacaactcatgtcaattcaataacttaagatttaaaacac |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
41012585 |
gttctgagtgagcatattagtaactacagtcatgcgatcggtgtcatttgatgaaaatctaacaactcatgtcaattcattaacttaagatttaaaacac |
41012486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 16 - 311
Target Start/End: Complemental strand, 12111746 - 12111453
Alignment:
| Q |
16 |
caaatatcagtagttttatcactttgtttctatttatttgtttatttcttctcattgtgttatttcagataataagttatgctgataagttacagaacaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
12111746 |
caaatatcagtagttttatcactttgtttctatttattggtttatttcttctcattgtgttatttcagataataagttatgctgataggttacagaacaa |
12111647 |
T |
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| Q |
116 |
agcaatccttttgattcacttttcagctcgttacacagtagaggtatgacattattgtttttggctcctgagaagaataaatcacccctcccaaaacctt |
215 |
Q |
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|||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||| ||| |||||| |||||| || |||||||||||||| |
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| T |
12111646 |
agcaatccttttgattcacttttccgcacgttacacagtagaggtatgacattattgtatttgtctcttgagaataataaacca-tcctcccaaaacctt |
12111548 |
T |
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| Q |
216 |
gttctgagtgagcatattagtaactacagtcatgcgatcggtgtcatttgatgaaaatctaacaactcatgtcaattcaataacttaagatttaaa |
311 |
Q |
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| | | |||||| | || ||||||| |||||||| ||| |||||| |||||||||||||||| |||| |||||||||| ||| || ||||||||| |
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| T |
12111547 |
ggttttagtgagtacatcagtaactgcagtcatgtgattggtgtcgattgatgaaaatctaacgactcgtgtcaattcagtaaatt-agatttaaa |
12111453 |
T |
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