View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8492_low_1 (Length: 813)
Name: NF8492_low_1
Description: NF8492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8492_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 15 - 406
Target Start/End: Complemental strand, 23291362 - 23290971
Alignment:
| Q |
15 |
atgaaaaggatggcatgcttctgggccatatggaaagaaagaagaaacatagtttttggccgcgcgcgaagaatcaacagtgccgcaattaactgatcac |
114 |
Q |
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| T |
23291362 |
atgaaaaggatggcatgcttctgggccatatggaaagaaagaagaaacatagtttttggccgcacgcgaagaatcaacagtgcagcaattaactgatcac |
23291263 |
T |
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| Q |
115 |
attagtactatatcttggtggtagtaaaaagcaggaatctttaattttgcttatggtttgaataaatggtggtttaacccttcaagttgtgctagttctt |
214 |
Q |
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| T |
23291262 |
attagtactatatactggtggtagtaaaaagcaggaatctctaattttgcttatggtttgaataaatggtggtttaacccttgaagttgtgctagttctt |
23291163 |
T |
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| Q |
215 |
gtttaaacttttggctggtttaagacttcgcctcttgtctgattattgcttttctgggcacaccttattcttagaatagatctttgacatgttctttttg |
314 |
Q |
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| T |
23291162 |
gtttaaacttttggctggtttaagacttcgccttttgtctgattattgcttttctgggcacaccttattcttagaatagatctttgacatgttctttttg |
23291063 |
T |
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| Q |
315 |
gcttttgtaaagaaataaataaaattaagtttccaatttagttgcgggttcaaagacttgtagcttccacacattcgacaagactccataga |
406 |
Q |
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| T |
23291062 |
gcttttgtaaagaaataaataaaattaagtttccaatttagttgcgggttcaaagacttgtagcttccacacattcgacaagactccataga |
23290971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 602 - 800
Target Start/End: Complemental strand, 23290698 - 23290502
Alignment:
| Q |
602 |
aggaaagtgttactccttgaaggtgagcattgtgcagttcatccaataaaattgaaactgaaggagaatactactaaa---attaatgatcctccaaaga |
698 |
Q |
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| T |
23290698 |
aggatagtgttaatccttgaaggtgagcattatgcagttcatacaataaaattgaaaccgaaggagaatactactaaaatcattaatgaccctctaaaga |
23290599 |
T |
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| Q |
699 |
tgaaaaataatggttatgttgacatatcacaatggaggtagatagagacattatgctaccacccaaattgaattgtaaaaataatgtagttaggaggatt |
798 |
Q |
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| T |
23290598 |
tgaaaaaaaattgttatgctcacatatca-aatgaagg----tagacacattatgctaccacccaaattgaattgcaaaaataatgtagttaggaggatt |
23290504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 457 - 565
Target Start/End: Complemental strand, 23290959 - 23290851
Alignment:
| Q |
457 |
atatcacacttgatgcttatattaaacaatattcattttaaaatggagggagtaactttttgggcttatctaatttatctgtgctgctcaaacacaatta |
556 |
Q |
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||||||||||||||||||||||| ||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||| ||||||||||| |
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| T |
23290959 |
atatcacacttgatgcttatatttaacgatattcattttaaaatggagtgaataactttttgggcttatctaatttatctgtggtgcttaaacacaatta |
23290860 |
T |
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| Q |
557 |
tcaattaaa |
565 |
Q |
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||||||||| |
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| T |
23290859 |
tcaattaaa |
23290851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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