View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8492_low_10 (Length: 361)
Name: NF8492_low_10
Description: NF8492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8492_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 23213439 - 23213088
Alignment:
| Q |
1 |
atacaagaaggtttaccactagtttttgcttcttccttagctcctcattggtatctttggaaaagaaagaagcaaccatcgtgtcttggtcctcctctga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23213439 |
atacaagaaggtttaccactagtttttgcttcttccttagcttctcattggtatctttggaaaagaaagaagcaaccatcgtgtcttggtcctcctctga |
23213340 |
T |
|
| Q |
101 |
agtagaatacaggaccctggctcctgctagtgaagctcaatggtttctgtttctcatgagatacttgcaggttcctaacccttacccatggttgtctact |
200 |
Q |
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|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23213339 |
agtagaatacaggaccctggctcccgcttgtgaagctcaatggtttctgtttctcatgagatacttgcaggttcctaacccttacccatggttgtctact |
23213240 |
T |
|
| Q |
201 |
gtaatgacaaatttggtctgtgctttgcagccagtcctgtgcattgtagtgcaagacgagatccaatcacggtttgttacatctgctgcctatcctatcc |
300 |
Q |
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||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
23213239 |
gtaatgacaaatttggtctgtgcgtttcagccaatcctgtgcattgtagtgcaagacgagatccaagcacggtttgttacatctgctgcctatcctatcc |
23213140 |
T |
|
| Q |
301 |
aaggaccaagtggaaatatcctctccaagtctccatccagattcattttcat |
352 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
23213139 |
aaggaccaagtggaaatatcctcaccaagtctccatccagagtcattttcat |
23213088 |
T |
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