View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8492_low_13 (Length: 307)

Name: NF8492_low_13
Description: NF8492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8492_low_13
NF8492_low_13
[»] chr7 (8 HSPs)
chr7 (162-299)||(40756434-40756573)
chr7 (162-299)||(28348694-28348833)
chr7 (162-299)||(26405424-26405563)
chr7 (162-299)||(27254684-27254823)
chr7 (162-299)||(27266107-27266246)
chr7 (22-55)||(28346675-28346708)
chr7 (23-56)||(40756873-40756906)
chr7 (23-56)||(40754939-40754972)
[»] chr5 (25 HSPs)
chr5 (162-299)||(25057825-25057964)
chr5 (162-299)||(27822229-27822368)
chr5 (162-299)||(42826009-42826148)
chr5 (162-299)||(5628944-5629083)
chr5 (162-299)||(5898567-5898706)
chr5 (162-299)||(20875496-20875635)
chr5 (166-299)||(41555421-41555556)
chr5 (162-299)||(2493696-2493834)
chr5 (162-299)||(33405251-33405390)
chr5 (162-299)||(28470868-28471007)
chr5 (165-299)||(377457-377593)
chr5 (162-239)||(35762762-35762841)
chr5 (22-56)||(41555274-41555308)
chr5 (22-56)||(42825686-42825720)
chr5 (22-55)||(41556632-41556665)
chr5 (24-56)||(5625559-5625591)
chr5 (23-53)||(20875168-20875198)
chr5 (22-56)||(25062213-25062247)
chr5 (22-56)||(27819853-27819887)
chr5 (22-56)||(42830949-42830983)
chr5 (23-56)||(5629393-5629426)
chr5 (23-56)||(20881361-20881394)
chr5 (23-56)||(25084605-25084638)
chr5 (23-56)||(25142575-25142608)
chr5 (24-56)||(27822681-27822713)
[»] chr3 (16 HSPs)
chr3 (162-299)||(21184142-21184281)
chr3 (162-299)||(53142372-53142511)
chr3 (162-299)||(30895076-30895215)
chr3 (162-299)||(49005821-49005960)
chr3 (162-299)||(51774376-51774515)
chr3 (162-299)||(39505244-39505383)
chr3 (162-262)||(21171156-21171258)
chr3 (208-298)||(15775994-15776084)
chr3 (24-56)||(21170847-21170879)
chr3 (23-56)||(21174390-21174423)
chr3 (23-56)||(30891699-30891732)
chr3 (23-56)||(30895524-30895557)
chr3 (23-56)||(47094799-47094832)
chr3 (23-56)||(47096904-47096937)
chr3 (23-56)||(53142831-53142864)
chr3 (24-56)||(53136584-53136616)
[»] chr8 (5 HSPs)
chr8 (162-299)||(7827604-7827743)
chr8 (162-299)||(40847229-40847366)
chr8 (162-226)||(33110956-33111022)
chr8 (23-56)||(7827272-7827305)
chr8 (23-56)||(7829984-7830017)
[»] chr2 (11 HSPs)
chr2 (162-299)||(4200589-4200728)
chr2 (162-297)||(8550004-8550141)
chr2 (162-299)||(7086843-7086982)
chr2 (162-299)||(8292095-8292234)
chr2 (162-299)||(31669447-31669586)
chr2 (162-299)||(42533676-42533815)
chr2 (162-269)||(16262312-16262421)
chr2 (23-56)||(32869288-32869321)
chr2 (23-56)||(38035865-38035898)
chr2 (24-56)||(32868663-32868695)
chr2 (24-56)||(35997777-35997809)
[»] chr1 (10 HSPs)
chr1 (162-299)||(48350159-48350298)
chr1 (162-297)||(49914067-49914204)
chr1 (162-299)||(14517704-14517843)
chr1 (162-299)||(27053778-27053917)
chr1 (162-265)||(12946710-12946815)
chr1 (162-239)||(46502126-46502205)
chr1 (210-266)||(45729308-45729364)
chr1 (162-210)||(14517216-14517266)
chr1 (162-204)||(36687390-36687434)
chr1 (23-56)||(51149017-51149050)
[»] chr4 (15 HSPs)
chr4 (162-299)||(43724758-43724897)
chr4 (162-299)||(42606723-42606862)
chr4 (162-299)||(25596989-25597128)
chr4 (162-299)||(41294430-41294569)
chr4 (162-299)||(43631376-43631515)
chr4 (162-291)||(2318638-2318762)
chr4 (162-299)||(35305990-35306129)
chr4 (165-299)||(20214371-20214507)
chr4 (162-238)||(31905882-31905960)
chr4 (162-242)||(31906381-31906463)
chr4 (22-56)||(45048660-45048694)
chr4 (198-253)||(32047637-32047692)
chr4 (23-56)||(17509403-17509436)
chr4 (23-56)||(43724540-43724573)
chr4 (23-56)||(43725174-43725207)
[»] chr6 (4 HSPs)
chr6 (162-299)||(7690228-7690361)
chr6 (212-286)||(32639401-32639475)
chr6 (185-286)||(32636040-32636141)
chr6 (23-56)||(168424-168457)
[»] scaffold0360 (1 HSPs)
scaffold0360 (22-55)||(10596-10629)
[»] scaffold0027 (1 HSPs)
scaffold0027 (23-56)||(55453-55486)


Alignment Details
Target: chr7 (Bit Score: 113; Significance: 3e-57; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 162 - 299
Target Start/End: Complemental strand, 40756573 - 40756434
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  40756573 tatttgaacacataatacataacgttattaactaccgattatttaaactcggacaatttctcctaatatgaccggtatgccgacacaacccacaccgtct 40756474  T
Q  260 cggtgtcggagtcctctccaccacctcctcgttcatttca 299  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  40756473 cggtgtcggagtcctctccaccacctcctcgtccatttca 40756434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 162 - 299
Target Start/End: Complemental strand, 28348833 - 28348694
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||    
T  28348833 tatttgaacacataatacataacgttattaactaccgattatttaaactcggacaatttctcctgatatgaccggtatgccgacacaacccacaccgtct 28348734  T
Q  260 cggtgtcggagtcctctccaccacctcctcgttcatttca 299  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  28348733 cggtgtcggagtcctctccaccacctcctcgtccatttca 28348694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 162 - 299
Target Start/End: Complemental strand, 26405563 - 26405424
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    ||||||||||||||||||| |  ||||||||| |||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||| |  ||||    
T  26405563 tatttgaacacataatacataacgttattaaccaccgattatttatactcggacaatttctcctaatatgaccggtatgccgacacaacccaaattgtct 26405464  T
Q  260 cggtgtcggagtcctctccaccacctcctcgttcatttca 299  Q
    |||||||||||||||||||||||||||| ||| |||||||    
T  26405463 cggtgtcggagtcctctccaccacctccacgtccatttca 26405424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 162 - 299
Target Start/End: Complemental strand, 27254823 - 27254684
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    ||||||||||||||||||| |  |||||||||||||| ||||||| |||||||||||||||| ||||||||| ||||||| |||||||||||||| ||||    
T  27254823 tatttgaacacataatacataatgttattaactaccggttatttatactcggacaatttctcctaatatgaccggtatgctgacacaacccacactgtct 27254724  T
Q  260 cggtgtcggagtcctctccaccacctcctcgttcatttca 299  Q
    ||||||||||||| |||| ||||||||||||| |||||||    
T  27254723 cggtgtcggagtcatctctaccacctcctcgtccatttca 27254684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 162 - 299
Target Start/End: Complemental strand, 27266246 - 27266107
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    ||||||||||||||||||| |  |||||||||||||| ||||||| |||||||||||||||| ||||||||| ||||| | |||||||||||||| ||||    
T  27266246 tatttgaacacataatacataatgttattaactaccggttatttatactcggacaatttctcctaatatgaccggtatactgacacaacccacactgtct 27266147  T
Q  260 cggtgtcggagtcctctccaccacctcctcgttcatttca 299  Q
    ||||||||||||| |||| ||||||||||||| |||||||    
T  27266146 cggtgtcggagtcatctctaccacctcctcgtccatttca 27266107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 55
Target Start/End: Original strand, 28346675 - 28346708
Alignment:
Q  22 gtcgttcccgccgtttgatctggcgggactgatt 55  Q
    ||||||||||||||||||||||||||||||||||    
T  28346675 gtcgttcccgccgtttgatctggcgggactgatt 28346708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 40756906 - 40756873
Alignment:
Q  23 tcgttcccgccgtttgatctggcgggactgatta 56  Q
    ||||||||||||||||||||||||||||||||||    
T  40756906 tcgttcccgccgtttgatctggcgggactgatta 40756873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 40754939 - 40754972
Alignment:
Q  23 tcgttcccgccgtttgatctggcgggactgatta 56  Q
    ||||||||||||||||||||| ||||||||||||    
T  40754939 tcgttcccgccgtttgatctgacgggactgatta 40754972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 162 - 299
Target Start/End: Original strand, 25057825 - 25057964
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  25057825 tatttgaacacataatacataacgttattaactaccgattatttaaactcggacaatttctcctaatatgaccggtatgccgacacaacccacaccgtct 25057924  T
Q  260 cggtgtcggagtcctctccaccacctcctcgttcatttca 299  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  25057925 cggtgtcggagtcctctccaccacctcctcgtccatttca 25057964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 162 - 299
Target Start/End: Complemental strand, 27822368 - 27822229
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  27822368 tatttgaacacataatacataacgttattaactaccgattatttaaactcggacaatttctcctaatatgaccggtatgccgacacaacccacaccgtct 27822269  T
Q  260 cggtgtcggagtcctctccaccacctcctcgttcatttca 299  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  27822268 cggtgtcggagtcctctccaccacctcctcgtccatttca 27822229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 162 - 299
Target Start/End: Original strand, 42826009 - 42826148
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  42826009 tatttgaacacataatacataacgttattaactaccgattatttaaactcggacaatttctcctaatatgaccggtatgccgacacaacccacaccgtct 42826108  T
Q  260 cggtgtcggagtcctctccaccacctcctcgttcatttca 299  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  42826109 cggtgtcggagtcctctccaccacctcctcgtccatttca 42826148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 162 - 299
Target Start/End: Complemental strand, 5629083 - 5628944
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  5629083 tatttgaacacataatacataacgttattaactaccgattatttaaactcggacaatttctcctaatatgaccggtatgccgacacaacccacaccgtct 5628984  T
Q  260 cggtgtcggagtcctctccaccacctcctcgttcatttca 299  Q
    |||||| ||||||||||||||||||||||||| |||||||    
T  5628983 cggtgttggagtcctctccaccacctcctcgtccatttca 5628944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 162 - 299
Target Start/End: Complemental strand, 5898706 - 5898567
Alignment:
Q  162 tatttgaacacataatacaaag--ttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    ||||||||||||||||||| |   |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  5898706 tatttgaacacataatacataacattattaactaccgattatttaaactcggacaatttctcctaatatgaccggtatgccgacacaacccacaccgtct 5898607  T
Q  260 cggtgtcggagtcctctccaccacctcctcgttcatttca 299  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  5898606 cggtgtcggagtcctctccaccacctcctcgtccatttca 5898567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 162 - 299
Target Start/End: Original strand, 20875496 - 20875635
Alignment:
Q  162 tatttgaacacataatacaaag--ttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    ||||||||||||||||||| |   |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  20875496 tatttgaacacataatacataacattattaactaccgattatttaaactcggacaatttctcctaatatgaccggtatgccgacacaacccacaccgtct 20875595  T
Q  260 cggtgtcggagtcctctccaccacctcctcgttcatttca 299  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  20875596 cggtgtcggagtcctctccaccacctcctcgtccatttca 20875635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 166 - 299
Target Start/End: Original strand, 41555421 - 41555556
Alignment:
Q  166 tgaacacataata--caaagttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtctcggt 263  Q
    |||||||||||||  ||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  41555421 tgaacacataatagacaaagttattaactatcgattatttaaactcggacaatttctcctaatatgaccggtatgccgacacaacccacaccgtctcggt 41555520  T
Q  264 gtcggagtcctctccaccacctcctcgttcatttca 299  Q
    |||||||||||||||||||||||||||| |||||||    
T  41555521 gtcggagtcctctccaccacctcctcgtccatttca 41555556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 162 - 299
Target Start/End: Original strand, 2493696 - 2493834
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    ||||||||||||||||||| |  |||||||||||||| ||||||| |||||||||||||||||||||||||| | ||||||||||||||| |||| ||||    
T  2493696 tatttgaacacataatacataacgttattaactaccggttatttatactcggacaatttctcttaatatgaccg-tatgccgacacaaccaacactgtct 2493794  T
Q  260 cggtgtcggagtcctctccaccacctcctcgttcatttca 299  Q
    |||| ||||||||||||| ||||||||||||| |||||||    
T  2493795 cggtatcggagtcctctctaccacctcctcgtccatttca 2493834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 162 - 299
Target Start/End: Original strand, 33405251 - 33405390
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    ||||||||||||||||||| |  |||||||||||||| ||||||| |||||||||||||||| ||||||||| ||||||||||||||| |||||| || |    
T  33405251 tatttgaacacataatacataacgttattaactaccggttatttatactcggacaatttctcctaatatgaccggtatgccgacacaaaccacactgttt 33405350  T
Q  260 cggtgtcggagtcctctccaccacctcctcgttcatttca 299  Q
    |||||||||||||||||| |||||||||| || |||||||    
T  33405351 cggtgtcggagtcctctctaccacctccttgtccatttca 33405390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 162 - 299
Target Start/End: Original strand, 28470868 - 28471007
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    ||||||||| ||||||||| |  ||||||||||| |  |||||||  || ||||||||| || ||||||||| |||||||||||||||||||||  ||||    
T  28470868 tatttgaactcataatacataacgttattaactatcagttatttatgcttggacaatttttcctaatatgaccggtatgccgacacaacccacattgtct 28470967  T
Q  260 cggtgtcggagtcctctccaccacctcctcgttcatttca 299  Q
    |||||||||||||||||| |||||||| |||| |||||||    
T  28470968 cggtgtcggagtcctctctaccacctcatcgtccatttca 28471007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 165 - 299
Target Start/End: Original strand, 377457 - 377593
Alignment:
Q  165 ttgaacacataataca-aagt-tattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtctcgg 262  Q
    |||||||||||||||| || | ||||||||||||||| |  |   |||||||||||||| |||||||||  | ||||||||||||||||||| |||||||    
T  377457 ttgaacacataatacataactatattaactaccgattttgaatggtcggacaatttctcctaatatgaccaggatgccgacacaacccacacggtctcgg 377556  T
Q  263 tgtcggagtcctctccaccacctcctcgttcatttca 299  Q
    |||||| || || ||  |||||||||||| |||||||    
T  377557 tgtcggtgttctttcttccacctcctcgtccatttca 377593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 162 - 239
Target Start/End: Complemental strand, 35762841 - 35762762
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgc 239  Q
    ||||||||||||||||||| |  ||||||||||| |  ||||||| |||||||||||||||| || |||||| |||||||    
T  35762841 tatttgaacacataatacataacgttattaactatctgttatttatactcggacaatttctcctactatgaccggtatgc 35762762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 41555274 - 41555308
Alignment:
Q  22 gtcgttcccgccgtttgatctggcgggactgatta 56  Q
    |||||||||||||||||||||||||||||||||||    
T  41555274 gtcgttcccgccgtttgatctggcgggactgatta 41555308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 42825686 - 42825720
Alignment:
Q  22 gtcgttcccgccgtttgatctggcgggactgatta 56  Q
    |||||||||||||||||||||||||||||||||||    
T  42825686 gtcgttcccgccgtttgatctggcgggactgatta 42825720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 41556665 - 41556632
Alignment:
Q  22 gtcgttcccgccgtttgatctggcgggactgatt 55  Q
    ||||||||||||||||||||||||||||||||||    
T  41556665 gtcgttcccgccgtttgatctggcgggactgatt 41556632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 5625559 - 5625591
Alignment:
Q  24 cgttcccgccgtttgatctggcgggactgatta 56  Q
    |||||||||||||||||||||||||||||||||    
T  5625559 cgttcccgccgtttgatctggcgggactgatta 5625591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 20875168 - 20875198
Alignment:
Q  23 tcgttcccgccgtttgatctggcgggactga 53  Q
    |||||||||||||||||||||||||||||||    
T  20875168 tcgttcccgccgtttgatctggcgggactga 20875198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 56
Target Start/End: Complemental strand, 25062247 - 25062213
Alignment:
Q  22 gtcgttcccgccgtttgatctggcgggactgatta 56  Q
    |||||||||||||||| ||||||||||||||||||    
T  25062247 gtcgttcccgccgtttcatctggcgggactgatta 25062213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 27819853 - 27819887
Alignment:
Q  22 gtcgttcccgccgtttgatctggcgggactgatta 56  Q
    |||||||||||||||| ||||||||||||||||||    
T  27819853 gtcgttcccgccgtttcatctggcgggactgatta 27819887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 56
Target Start/End: Complemental strand, 42830983 - 42830949
Alignment:
Q  22 gtcgttcccgccgtttgatctggcgggactgatta 56  Q
    |||||||||||||||| ||||||||||||||||||    
T  42830983 gtcgttcccgccgtttcatctggcgggactgatta 42830949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 5629426 - 5629393
Alignment:
Q  23 tcgttcccgccgtttgatctggcgggactgatta 56  Q
    ||||||||||||||| ||||||||||||||||||    
T  5629426 tcgttcccgccgtttcatctggcgggactgatta 5629393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 20881394 - 20881361
Alignment:
Q  23 tcgttcccgccgtttgatctggcgggactgatta 56  Q
    ||||||||||||||| ||||||||||||||||||    
T  20881394 tcgttcccgccgtttcatctggcgggactgatta 20881361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 25084638 - 25084605
Alignment:
Q  23 tcgttcccgccgtttgatctggcgggactgatta 56  Q
    ||||||||||||||| ||||||||||||||||||    
T  25084638 tcgttcccgccgtttcatctggcgggactgatta 25084605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 25142608 - 25142575
Alignment:
Q  23 tcgttcccgccgtttgatctggcgggactgatta 56  Q
    ||||||||||||||| ||||||||||||||||||    
T  25142608 tcgttcccgccgtttcatctggcgggactgatta 25142575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 27822713 - 27822681
Alignment:
Q  24 cgttcccgccgtttgatctggcgggactgatta 56  Q
    |||||||||||||||||||||||| ||||||||    
T  27822713 cgttcccgccgtttgatctggcggaactgatta 27822681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 162 - 299
Target Start/End: Complemental strand, 21184281 - 21184142
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  21184281 tatttgaacacataatacataacgttattaactaccgattatttaaactcggacaatttctcctaatatgaccggtatgccgacacaacccacaccgtct 21184182  T
Q  260 cggtgtcggagtcctctccaccacctcctcgttcatttca 299  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  21184181 cggtgtcggagtcctctccaccacctcctcgtccatttca 21184142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 162 - 299
Target Start/End: Complemental strand, 53142511 - 53142372
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  53142511 tatttgaacacataatacataacgttattaactaccgattatttaaactcggacaatttctcctaatatgaccggtatgccgacacaacccacaccgtct 53142412  T
Q  260 cggtgtcggagtcctctccaccacctcctcgttcatttca 299  Q
    |||||| ||||||||||||||||||||||||| |||||||    
T  53142411 cggtgttggagtcctctccaccacctcctcgtccatttca 53142372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 162 - 299
Target Start/End: Complemental strand, 30895215 - 30895076
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  30895215 tatttgaacacataatacataacgttattaactaccgattatttaaactcggacaatttctcctaatatgaccggtatgccgacacaacccacaccgtct 30895116  T
Q  260 cggtgtcggagtcctctccaccacctcctcgttcatttca 299  Q
    ||| || ||||||||||||||||||||||||| |||||||    
T  30895115 cggcgttggagtcctctccaccacctcctcgtccatttca 30895076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 162 - 299
Target Start/End: Complemental strand, 49005960 - 49005821
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    ||||||||||||||||||| |  |||||||| ||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||| ||||    
T  49005960 tatttgaacacataatacataacgttattaattaccgattatttatactcggacaatttctcctaatatgaccggtatgccgacacaacccacactgtct 49005861  T
Q  260 cggtgtcggagtcctctccaccacctcctcgttcatttca 299  Q
    ||||||||||||||||||||||||| |||||| |||||||    
T  49005860 cggtgtcggagtcctctccaccaccacctcgtccatttca 49005821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 162 - 299
Target Start/End: Original strand, 51774376 - 51774515
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    ||||||||||||||||||| |  |||||||||||||||||||||| |||||||||||||||| ||||||||  |||||||||||||||||||||  ||||    
T  51774376 tatttgaacacataatacataacgttattaactaccgattatttatactcggacaatttctcctaatatgatcggtatgccgacacaacccacattgtct 51774475  T
Q  260 cggtgtcggagtcctctccaccacctcctcgttcatttca 299  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  51774476 cggtgtcggagtcctctccaccacctcctcgtccatttca 51774515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 162 - 299
Target Start/End: Original strand, 39505244 - 39505383
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    ||||||||||||||||||| |  |||||||||||||| ||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||| ||||    
T  39505244 tatttgaacacataatacataacgttattaactaccggttatttatactcggacaatttctcctaatatgaccggtatgccgacacaacccacactgtct 39505343  T
Q  260 cggtgtcggagtcctctccaccacctcctcgttcatttca 299  Q
    || ||||| ||||||||| |||| |||||||| |||||||    
T  39505344 cgatgtcgaagtcctctctaccaactcctcgtccatttca 39505383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 162 - 262
Target Start/End: Original strand, 21171156 - 21171258
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  21171156 tatttgaacacataatacataacgttattaactaccgattatttaaactcggacaatttctcctaatatgaccggtatgccgacacaacccacaccgtct 21171255  T
Q  260 cgg 262  Q
    |||    
T  21171256 cgg 21171258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 298
Target Start/End: Original strand, 15775994 - 15776084
Alignment:
Q  208 tcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtctcggtgtcggagtcctctccaccacctcctcgttcatttc 298  Q
    |||||||||||||| ||||||| | || |||||||||||||||||||  |||||||||||| ||||| |   |||||||||||| ||||||    
T  15775994 tcggacaatttctcctaatatggccgggatgccgacacaacccacacaatctcggtgtcggtgtccttttttccacctcctcgtccatttc 15776084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 21170847 - 21170879
Alignment:
Q  24 cgttcccgccgtttgatctggcgggactgatta 56  Q
    |||||||||||||||||||||||||||||||||    
T  21170847 cgttcccgccgtttgatctggcgggactgatta 21170879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 21174423 - 21174390
Alignment:
Q  23 tcgttcccgccgtttgatctggcgggactgatta 56  Q
    ||||||||||||||| ||||||||||||||||||    
T  21174423 tcgttcccgccgtttcatctggcgggactgatta 21174390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 30891699 - 30891732
Alignment:
Q  23 tcgttcccgccgtttgatctggcgggactgatta 56  Q
    ||||||||||||||| ||||||||||||||||||    
T  30891699 tcgttcccgccgtttcatctggcgggactgatta 30891732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 30895557 - 30895524
Alignment:
Q  23 tcgttcccgccgtttgatctggcgggactgatta 56  Q
    ||||||||||||||| ||||||||||||||||||    
T  30895557 tcgttcccgccgtttcatctggcgggactgatta 30895524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 47094799 - 47094832
Alignment:
Q  23 tcgttcccgccgtttgatctggcgggactgatta 56  Q
    ||||||||||||||| ||||||||||||||||||    
T  47094799 tcgttcccgccgtttcatctggcgggactgatta 47094832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 47096937 - 47096904
Alignment:
Q  23 tcgttcccgccgtttgatctggcgggactgatta 56  Q
    ||||||||||||||| ||||||||||||||||||    
T  47096937 tcgttcccgccgtttcatctggcgggactgatta 47096904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 53142864 - 53142831
Alignment:
Q  23 tcgttcccgccgtttgatctggcgggactgatta 56  Q
    ||||||||||||||| ||||||||||||||||||    
T  53142864 tcgttcccgccgtttcatctggcgggactgatta 53142831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 53136584 - 53136616
Alignment:
Q  24 cgttcccgccgtttgatctggcgggactgatta 56  Q
    |||||||||||||| ||||||||||||||||||    
T  53136584 cgttcccgccgtttcatctggcgggactgatta 53136616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 8e-55; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 162 - 299
Target Start/End: Original strand, 7827604 - 7827743
Alignment:
Q  162 tatttgaacacataatacaaag--ttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    ||||||||||||||||||| |   |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  7827604 tatttgaacacataatacataacattattaactaccgattatttaaactcggacaatttctcctaatatgaccggtatgccgacacaacccacaccgtct 7827703  T
Q  260 cggtgtcggagtcctctccaccacctcctcgttcatttca 299  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  7827704 cggtgtcggagtcctctccaccacctcctcgtccatttca 7827743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 162 - 299
Target Start/End: Complemental strand, 40847366 - 40847229
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    ||||||||||||||||||| |  |||||||||||||| ||||||| |||||||||||||||| ||||||||| |||||||||||||||||  ||| ||||    
T  40847366 tatttgaacacataatacataacgttattaactaccggttatttatactcggacaatttctcctaatatgaccggtatgccgacacaacc--cactgtct 40847269  T
Q  260 cggtgtcggagtcctctccaccacctcctcgttcatttca 299  Q
    | ||||| |||||||||| ||||||||||||| |||||||    
T  40847268 cagtgtcagagtcctctctaccacctcctcgtccatttca 40847229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 33110956 - 33111022
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattatttaaactcggacaatttctcttaat 226  Q
    ||||| ||||||||||||| |  |||||||||||||||||||||| |||||||||||||||| ||||    
T  33110956 tatttaaacacataatacataacgttattaactaccgattatttatactcggacaatttctcctaat 33111022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 7827272 - 7827305
Alignment:
Q  23 tcgttcccgccgtttgatctggcgggactgatta 56  Q
    ||||||||||||||||||||||||||||||||||    
T  7827272 tcgttcccgccgtttgatctggcgggactgatta 7827305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 7830017 - 7829984
Alignment:
Q  23 tcgttcccgccgtttgatctggcgggactgatta 56  Q
    ||||||||||||||| ||||||||||||||||||    
T  7830017 tcgttcccgccgtttcatctggcgggactgatta 7829984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 109; Significance: 8e-55; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 162 - 299
Target Start/End: Complemental strand, 4200728 - 4200589
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    ||||||||||||||||||| |  |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  4200728 tatttgaacacataatacacaacgttattaactaccgattatttatactcggacaatttctcctaatatgactggtatgccgacacaacccacactgtct 4200629  T
Q  260 cggtgtcggagtcctctccaccacctcctcgttcatttca 299  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  4200628 cggtgtcggagtcctctccaccacctcctcgtccatttca 4200589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 162 - 297
Target Start/End: Complemental strand, 8550141 - 8550004
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  8550141 tatttgaacacataatacataacgttattaactaccgattatttaaactcggacaatttctcctaatatgaccggtatgccgacacaacccacaccgtct 8550042  T
Q  260 cggtgtcggagtcctctccaccacctcctcgttcattt 297  Q
     ||||||||||||||||||||||||||||||| |||||    
T  8550041 tggtgtcggagtcctctccaccacctcctcgtccattt 8550004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 162 - 299
Target Start/End: Original strand, 7086843 - 7086982
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    |||||||||||||||||||||  |||||||||||||| ||||||| |||||||||||||||| ||||||||| ||||||| |||||||||||||| ||||    
T  7086843 tatttgaacacataatacaaaacgttattaactaccggttatttatactcggacaatttctcctaatatgaccggtatgcagacacaacccacactgtct 7086942  T
Q  260 cggtgtcggagtcctctccaccacctcctcgttcatttca 299  Q
    ||||||||||||||| || ||||||||||||| |||||||    
T  7086943 cggtgtcggagtcctatctaccacctcctcgtccatttca 7086982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 162 - 299
Target Start/End: Complemental strand, 8292234 - 8292095
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    ||||||||||||||||||| |  |||||||||||||| ||||||| ||||||||| |||||| ||||||||| |||||||||||||||||||||| ||||    
T  8292234 tatttgaacacataatacataacgttattaactaccggttatttatactcggacagtttctcctaatatgaccggtatgccgacacaacccacactgtct 8292135  T
Q  260 cggtgtcggagtcctctccaccacctcctcgttcatttca 299  Q
    |||||||||||||||||| ||||||||||||| |||||||    
T  8292134 cggtgtcggagtcctctctaccacctcctcgtccatttca 8292095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 162 - 299
Target Start/End: Complemental strand, 31669586 - 31669447
Alignment:
Q  162 tatttgaacacataataca--aagttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    |||||||||||||||||||  ||||||||||||||   ||||||| |||||||||||||||  ||||||||  |||||||||||||||||||||| ||||    
T  31669586 tatttgaacacataatacataaagttattaactactagttatttatactcggacaatttcttctaatatgatcggtatgccgacacaacccacactgtct 31669487  T
Q  260 cggtgtcggagtcctctccaccacctcctcgttcatttca 299  Q
    |||||||||||||||||| ||||||||||||| |||||||    
T  31669486 cggtgtcggagtcctctctaccacctcctcgtccatttca 31669447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 162 - 299
Target Start/End: Original strand, 42533676 - 42533815
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    ||||||||||||||||||| |  |||||||||||||  ||||||| |||||||||||||||| ||||||||| | |||||||||||||| ||||| ||||    
T  42533676 tatttgaacacataatacataacgttattaactaccagttatttatactcggacaatttctcataatatgaccgttatgccgacacaacacacactgtct 42533775  T
Q  260 cggtgtcggagtcctctccaccacctcctcgttcatttca 299  Q
    |||||||||| ||||| | ||||||||||||  |||||||    
T  42533776 cggtgtcggaatcctcactaccacctcctcgaccatttca 42533815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 162 - 269
Target Start/End: Complemental strand, 16262421 - 16262312
Alignment:
Q  162 tatttgaacacataatacaaag--ttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    |||||||||||| |||||| |   ||||||||||||||||||||| ||||||| |||||||| |||||||||| |||||||||||||| ||||| |||||    
T  16262421 tatttgaacacacaatacataacattattaactaccgattatttatactcggaaaatttctcctaatatgactagtatgccgacacaatccacatcgtct 16262322  T
Q  260 cggtgtcgga 269  Q
    ||||||||||    
T  16262321 cggtgtcgga 16262312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 32869321 - 32869288
Alignment:
Q  23 tcgttcccgccgtttgatctggcgggactgatta 56  Q
    ||||||||||||||| ||||||||||||||||||    
T  32869321 tcgttcccgccgtttcatctggcgggactgatta 32869288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 38035865 - 38035898
Alignment:
Q  23 tcgttcccgccgtttgatctggcgggactgatta 56  Q
    ||||||||||||||| ||||||||||||||||||    
T  38035865 tcgttcccgccgtttcatctggcgggactgatta 38035898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 32868663 - 32868695
Alignment:
Q  24 cgttcccgccgtttgatctggcgggactgatta 56  Q
    |||||||||||||| ||||||||||||||||||    
T  32868663 cgttcccgccgtttcatctggcgggactgatta 32868695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 35997777 - 35997809
Alignment:
Q  24 cgttcccgccgtttgatctggcgggactgatta 56  Q
    |||||||||||||| ||||||||||||||||||    
T  35997777 cgttcccgccgtttcatctggcgggactgatta 35997809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 8e-55; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 162 - 299
Target Start/End: Complemental strand, 48350298 - 48350159
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  48350298 tatttgaacacataatacataacgttattaactaccgattatttaaactcggacaatttctcctaatatgaccggtatgccgacacaacccacaccgtct 48350199  T
Q  260 cggtgtcggagtcctctccaccacctcctcgttcatttca 299  Q
    |||||| ||||||||||||||||||||||||| |||||||    
T  48350198 cggtgttggagtcctctccaccacctcctcgtccatttca 48350159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 162 - 297
Target Start/End: Complemental strand, 49914204 - 49914067
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    ||||||||||||||||||| |  ||||||||||| || ||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||| ||||    
T  49914204 tatttgaacacataatacataatgttattaactatcggttatttatactcggacaatttctcctaatatgaccggtatgccgacacaacccacactgtct 49914105  T
Q  260 cggtgtcggagtcctctccaccacctcctcgttcattt 297  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  49914104 cggtgtcggagtcctctctaccacctcctcgtccattt 49914067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 162 - 299
Target Start/End: Complemental strand, 14517843 - 14517704
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    ||||||||||||||||||| |  |||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||| ||||    
T  14517843 tatttgaacacataatacataacgttattaactaccgattatttatactcggacaatttctcctaatatgaccggtatgccgacacaacccacactgtct 14517744  T
Q  260 cggtgtcggagtcctctccaccacctcctcgttcatttca 299  Q
    || ||||| |||||| || ||||||||||||| |||||||    
T  14517743 cgttgtcgaagtcctttctaccacctcctcgtccatttca 14517704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 162 - 299
Target Start/End: Complemental strand, 27053917 - 27053778
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    |||||||||||||| |||| |  ||||||||||| |||||||||| |||||||||||||||| ||| ||||| |||||||||||||||||||||| ||||    
T  27053917 tatttgaacacatagtacataacgttattaactatcgattatttatactcggacaatttctcctaaaatgaccggtatgccgacacaacccacactgtct 27053818  T
Q  260 cggtgtcggagtcctctccaccacctcctcgttcatttca 299  Q
    |||||| ||||||||||| ||||||||||||| |||||||    
T  27053817 cggtgttggagtcctctctaccacctcctcgtccatttca 27053778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 162 - 265
Target Start/End: Original strand, 12946710 - 12946815
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  12946710 tatttgaacacataatacataacgttattaactaccgattatttaaactcggacaatttctcctaatatgaccggtatgccgacacaacccacaccgtct 12946809  T
Q  260 cggtgt 265  Q
    ||||||    
T  12946810 cggtgt 12946815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 239
Target Start/End: Original strand, 46502126 - 46502205
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgc 239  Q
    ||||||||||||||||||| |  ||||||||||| || ||||||| |||||||||||||||| || |||||| |||||||    
T  46502126 tatttgaacacataatacataacgttattaactatcggttatttatactcggacaatttctcctactatgaccggtatgc 46502205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 45729364 - 45729308
Alignment:
Q  210 ggacaatttctcttaatatgactggtatgccgacacaacccacaccgtctcggtgtc 266  Q
    |||||||||||| | ||||||| || ||||||||||||||||||| |||||||||||    
T  45729364 ggacaatttctcctgatatgaccgggatgccgacacaacccacacagtctcggtgtc 45729308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 14517216 - 14517266
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattatttaaactcg 210  Q
    ||||||||||||||||||| |  |||||||||||||||||||||| |||||    
T  14517216 tatttgaacacataatacataacgttattaactaccgattatttatactcg 14517266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 36687390 - 36687434
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattattta 204  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||    
T  36687390 tatttgaacacataatacataacgttattaactaccgattattta 36687434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 51149050 - 51149017
Alignment:
Q  23 tcgttcccgccgtttgatctggcgggactgatta 56  Q
    ||||||||||||||| ||||||||||||||||||    
T  51149050 tcgttcccgccgtttcatctggcgggactgatta 51149017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 162 - 299
Target Start/End: Complemental strand, 43724897 - 43724758
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  43724897 tatttgaacacataatacataacgttattaactaccgattatttaaactcggacaatttctcctaatatgaccggtatgccgacacaacccacaccgtct 43724798  T
Q  260 cggtgtcggagtcctctccaccacctcctcgttcatttca 299  Q
    ||| || ||||||||||||||||||||||||| |||||||    
T  43724797 cggcgttggagtcctctccaccacctcctcgtccatttca 43724758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 162 - 299
Target Start/End: Complemental strand, 42606862 - 42606723
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    ||||||||||||||||||| |  |||||||||||||| ||||||| |||| ||||||||||| ||||||||| |||||||||||||||||||||| ||||    
T  42606862 tatttgaacacataatacataacgttattaactaccggttatttatactcagacaatttctcctaatatgaccggtatgccgacacaacccacactgtct 42606763  T
Q  260 cggtgtcggagtcctctccaccacctcctcgttcatttca 299  Q
    |||||||||||||||||| ||||||||||||| |||||||    
T  42606762 cggtgtcggagtcctctctaccacctcctcgtccatttca 42606723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 162 - 299
Target Start/End: Complemental strand, 25597128 - 25596989
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    ||||||||||||||||||| |  |||||||||||||| ||||||| |||||||||||||||| ||||||||| | |||||||||||||||||||| ||||    
T  25597128 tatttgaacacataatacataatgttattaactaccggttatttatactcggacaatttctcctaatatgaccgatatgccgacacaacccacactgtct 25597029  T
Q  260 cggtgtcggagtcctctccaccacctcctcgttcatttca 299  Q
    |||||| ||||||||||| ||||||||||||| |||||||    
T  25597028 cggtgttggagtcctctctaccacctcctcgtccatttca 25596989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 162 - 299
Target Start/End: Original strand, 41294430 - 41294569
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    ||||||||||||||||||| |  |||||||||||||  ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  41294430 tatttgaacacataatacataacgttattaactaccagttatttatactcggacaatttctcttaatatgaccggtatgccgacacaacccacactgtct 41294529  T
Q  260 cggtgtcggagtcctctccaccacctcctcgttcatttca 299  Q
    || ||||||||||||||| || |||||||||| |||||||    
T  41294530 cgatgtcggagtcctctctacaacctcctcgtccatttca 41294569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 162 - 299
Target Start/End: Original strand, 43631376 - 43631515
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    |||||||| |||||||||| |  |||||||||||||| ||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||| ||||    
T  43631376 tatttgaatacataatacataatgttattaactaccggttatttatactcggacaatttctcctaatatgaccggtatgccgacacaacccacactgtct 43631475  T
Q  260 cggtgtcggagtcctctccaccacctcctcgttcatttca 299  Q
    |||| ||| ||||||||| ||||||||||||| |||||||    
T  43631476 cggtatcgaagtcctctctaccacctcctcgtccatttca 43631515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 162 - 291
Target Start/End: Complemental strand, 2318762 - 2318638
Alignment:
Q  162 tatttgaacacataatacaaagttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtctcg 261  Q
    ||||||||||||||||     |||||||||||||| ||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||    
T  2318762 tatttgaacacataat-----gttattaactaccggttatttatactcggacaatttctcctaatatgaccggtatgccgacacaacccacactgtctcg 2318668  T
Q  262 gtgtcggagtcctctccaccacctcctcgt 291  Q
    ||||| |||||||||| |||||||||||||    
T  2318667 gtgtcagagtcctctctaccacctcctcgt 2318638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 162 - 299
Target Start/End: Original strand, 35305990 - 35306129
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    ||||| ||||||||||||| |  ||||||||||||||||| |||| |||||||||||||||| ||||||||| |||||||||||||||| ||||| ||||    
T  35305990 tatttaaacacataatacataacgttattaactaccgattttttatactcggacaatttctcataatatgaccggtatgccgacacaacacacactgtct 35306089  T
Q  260 cggtgtcggagtcctctccaccacctcctcgttcatttca 299  Q
    |||||||||||||||||| |  ||| |||||| |||||||    
T  35306090 cggtgtcggagtcctctctatgaccacctcgtccatttca 35306129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 165 - 299
Target Start/End: Original strand, 20214371 - 20214507
Alignment:
Q  165 ttgaacacataatacaaa--gttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtctcgg 262  Q
    |||||||||||||||| |  |||||||||||||  ||||||| || |||||||||| |  ||||||||  |||||| ||||||||||||||  |||||||    
T  20214371 ttgaacacataatacataacgttattaactaccagttatttatacacggacaattttttctaatatgatcggtatgtcgacacaacccacattgtctcgg 20214470  T
Q  263 tgtcggagtcctctccaccacctcctcgttcatttca 299  Q
     |||| ||||||||| ||||||||||||| |||||||    
T  20214471 cgtcgaagtcctctctaccacctcctcgtccatttca 20214507  T

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Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 162 - 238
Target Start/End: Original strand, 31905882 - 31905960
Alignment:
Q  162 tatttgaacacataataca--aagttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatg 238  Q
    |||||||||||||||||||  | |||||||||||||||||||||| ||||||| | |||||| ||||||||| ||||||    
T  31905882 tatttgaacacataatacatcacgttattaactaccgattatttatactcggatagtttctcctaatatgaccggtatg 31905960  T

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Target: chr4; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 162 - 242
Target Start/End: Complemental strand, 31906463 - 31906381
Alignment:
Q  162 tatttgaacacataataca--aagttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccga 242  Q
    ||||| |||||||||||||  | |||||||||||||||||||||| | ||||||| |||||| ||||||||| ||||||||||    
T  31906463 tattttaacacataatacatcacgttattaactaccgattatttatattcggacagtttctcctaatatgaccggtatgccga 31906381  T

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Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 56
Target Start/End: Complemental strand, 45048694 - 45048660
Alignment:
Q  22 gtcgttcccgccgtttgatctggcgggactgatta 56  Q
    |||||||||||||||||||||||||||||||||||    
T  45048694 gtcgttcccgccgtttgatctggcgggactgatta 45048660  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 198 - 253
Target Start/End: Complemental strand, 32047692 - 32047637
Alignment:
Q  198 ttatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccaca 253  Q
    |||||||  ||||||||||||||| |||||||| ||| ||||||||| ||||||||    
T  32047692 ttatttatgctcggacaatttctcctaatatgattgggatgccgacataacccaca 32047637  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 17509436 - 17509403
Alignment:
Q  23 tcgttcccgccgtttgatctggcgggactgatta 56  Q
    ||||||||||||||| ||||||||||||||||||    
T  17509436 tcgttcccgccgtttcatctggcgggactgatta 17509403  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 43724540 - 43724573
Alignment:
Q  23 tcgttcccgccgtttgatctggcgggactgatta 56  Q
    ||||||||||||||| ||||||||||||||||||    
T  43724540 tcgttcccgccgtttcatctggcgggactgatta 43724573  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 43725207 - 43725174
Alignment:
Q  23 tcgttcccgccgtttgatctggcgggactgatta 56  Q
    ||||||||||||||| ||||||||||||||||||    
T  43725207 tcgttcccgccgtttcatctggcgggactgatta 43725174  T

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Target: chr6 (Bit Score: 74; Significance: 6e-34; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 162 - 299
Target Start/End: Complemental strand, 7690361 - 7690228
Alignment:
Q  162 tatttgaacacataatacaaa--gttattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtct 259  Q
    ||||||||||||||||||| |  |||||||||||||||||||||| |||||||||||||||  ||||||||| |||||||||||||||||||||          
T  7690361 tatttgaacacataatacataacgttattaactaccgattatttatactcggacaatttcttctaatatgaccggtatgccgacacaacccaca------ 7690268  T
Q  260 cggtgtcggagtcctctccaccacctcctcgttcatttca 299  Q
      |||||||||||||||||||||||||||||| |||||||    
T  7690267 atgtgtcggagtcctctccaccacctcctcgtccatttca 7690228  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 286
Target Start/End: Complemental strand, 32639475 - 32639401
Alignment:
Q  212 acaatttctcttaatatgactggtatgccgacacaacccacaccgtctcggtgtcggagtcctctccaccacctc 286  Q
    |||||||||| |||||||| ||| |||  || ||||||||||| ||||||||||||| ||||| |||||| ||||    
T  32639475 acaatttctcctaatatgattgggatgttgatacaacccacacggtctcggtgtcggtgtcctttccacctcctc 32639401  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 286
Target Start/End: Original strand, 32636040 - 32636141
Alignment:
Q  185 tattaactaccgattatttaaactcggacaatttctcttaatatgactggtatgccgacacaacccacaccgtctcggtgtcggagtcctctccaccacc 284  Q
    |||||| ||||| |||||||   ||||  |||||||| |||| ||| ||| |||||||||||||| ||||  |||||||||||| ||||| |||||| ||    
T  32636040 tattaattaccggttatttatgatcgggaaatttctcctaatgtgattgggatgccgacacaacctacacaatctcggtgtcggtgtcctttccacctcc 32636139  T
Q  285 tc 286  Q
    ||    
T  32636140 tc 32636141  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 168424 - 168457
Alignment:
Q  23 tcgttcccgccgtttgatctggcgggactgatta 56  Q
    ||||||||||||||| ||||||||||||||||||    
T  168424 tcgttcccgccgtttcatctggcgggactgatta 168457  T

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Target: scaffold0360 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 10629 - 10596
Alignment:
Q  22 gtcgttcccgccgtttgatctggcgggactgatt 55  Q
    ||||||||||||||||||||||||||||||||||    
T  10629 gtcgttcccgccgtttgatctggcgggactgatt 10596  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 56
Target Start/End: Original strand, 55453 - 55486
Alignment:
Q  23 tcgttcccgccgtttgatctggcgggactgatta 56  Q
    ||||||||||||||| ||||||||||||||||||    
T  55453 tcgttcccgccgtttcatctggcgggactgatta 55486  T

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