View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8492_low_14 (Length: 300)
Name: NF8492_low_14
Description: NF8492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8492_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 3 - 125
Target Start/End: Original strand, 14130689 - 14130807
Alignment:
| Q |
3 |
caattatagcaaagataaaaagagcaatatgaagaatgtacgtagaagatctgaagatggaaaagccaaccaaaccctagtgcaattaaatatttatccc |
102 |
Q |
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| T |
14130689 |
caattatagcaaagataaaaagagcaatatgaagaatgta----gaagatctgaagatggaaaagccaaccaaaccctagtgcaattaaatatttatccc |
14130784 |
T |
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| Q |
103 |
cataacattacagatgataccgt |
125 |
Q |
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| T |
14130785 |
cataacattacagatgataccgt |
14130807 |
T |
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Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 197 - 291
Target Start/End: Original strand, 14130823 - 14130921
Alignment:
| Q |
197 |
aatctcatcaccacctccatattttaagatgaattttaattatcatagttagctccttaatcctttaatcttagctct----gccccttccctctctgc |
291 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
14130823 |
aatctcatcaccacctccatattttaaaatgaattttaattatcatagttagctccttaatcctttaatcttagctctgctggccccttccctctctgc |
14130921 |
T |
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