View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8492_low_16 (Length: 290)

Name: NF8492_low_16
Description: NF8492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8492_low_16
NF8492_low_16
[»] chr2 (7 HSPs)
chr2 (1-272)||(40082418-40082689)
chr2 (105-272)||(40094762-40094928)
chr2 (128-262)||(40063855-40063989)
chr2 (17-73)||(40094688-40094744)
chr2 (19-61)||(5122712-5122754)
chr2 (24-70)||(21220409-21220455)
chr2 (78-122)||(3101697-3101741)
[»] chr4 (2 HSPs)
chr4 (155-266)||(22011868-22011979)
chr4 (6-62)||(48598431-48598487)
[»] chr8 (1 HSPs)
chr8 (16-61)||(7326607-7326652)
[»] chr3 (2 HSPs)
chr3 (22-71)||(7947443-7947492)
chr3 (19-70)||(17127250-17127302)


Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 40082418 - 40082689
Alignment:
Q  1 gttcaacccgagctctaacatatcaaatgtccccacatccttttaccatatgagttgtacttacgggacaatcgcttgtgttctttgtttccgtttatca 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40082418 gttcaacccgagctctaacatatcaaatgttcccacatccttttaccatatgagttgtacttacgggacaatcacttgtgttctttgtttccgtttatca 40082517  T
Q  101 tatctgttgtcttttgaaccagagttgttgtaacatactaaaatcatcttattaacaggcctgcattggatcaagaagttgtagtgttggagtatcaact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40082518 tatctgttgtcttttgaaccagagttgttgtaacatactaaaatcatcttattaacaggcctgcattggatcaagaagttgtagtgttggagtatcaact 40082617  T
Q  201 gatacattcggagacccttgtagaggagtaccgaaaagtttagctgttgaagctacttgtgcatagacaaac 272  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40082618 gatacatttggagacccttgtagaggagtaccgaaaagtttagctgttgaagctacttgtgcatagacaaac 40082689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 105 - 272
Target Start/End: Original strand, 40094762 - 40094928
Alignment:
Q  105 tgttgtcttttgaaccagagttgttgtaacatactaaaatcatcttattaacaggcctgcattggatcaagaagttgtagtgttggagtatcaactgata 204  Q
    |||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  40094762 tgttttcttttgaacctga-ttgttgtaacatactaaaatcatcttattaacaggcctgcattggatcaagaagttgtagtattggagtatcaaccgata 40094860  T
Q  205 cattcggagacccttgtagaggagtaccgaaaagtttagctgttgaagctacttgtgcatagacaaac 272  Q
    |||| ||||||||||||| |||||| || || |||||||| |||||||||||||||||||||||||||    
T  40094861 catttggagacccttgtaaaggagtgccaaagagtttagccgttgaagctacttgtgcatagacaaac 40094928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 128 - 262
Target Start/End: Original strand, 40063855 - 40063989
Alignment:
Q  128 ttgtaacatactaaaatcatcttattaacaggcctgcattggatcaagaagttgtagtgttggagtatcaactgatacattcggagacccttgtagagga 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||    
T  40063855 ttgtaacatactaaaatcatcttattaacaggcctgcattggatcaagaagttgtagtattggagtatcaaccgatacatttggagacccttgtagagga 40063954  T
Q  228 gtaccgaaaagtttagctgttgaagctacttgtgc 262  Q
    || || || ||||||||||||||||||||||||||    
T  40063955 gtgccaaagagtttagctgttgaagctacttgtgc 40063989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 40094688 - 40094744
Alignment:
Q  17 aacatatcaaatgtccccacatccttttaccatatgagttgtacttacgggacaatc 73  Q
    |||||||||||||||||  ||   ||||||||| |||||||||||||||||||||||    
T  40094688 aacatatcaaatgtccctgcaaaattttaccatctgagttgtacttacgggacaatc 40094744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 5122712 - 5122754
Alignment:
Q  19 catatcaaatgtccccacatccttttaccatatgagttgtact 61  Q
    ||||||||||||||| ||| ||||||| |||||||||||||||    
T  5122712 catatcaaatgtccctacaaccttttaacatatgagttgtact 5122754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 21220455 - 21220409
Alignment:
Q  24 caaatgtccccacatccttttaccatatgagttgtacttacgggaca 70  Q
    |||||||||||||| ||||||||||| ||||||| | ||||||||||    
T  21220455 caaatgtccccacaaccttttaccatctgagttgcaattacgggaca 21220409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 3101697 - 3101741
Alignment:
Q  78 gtgttctttgtttccgtttatcatatctgttgtcttttgaaccag 122  Q
    ||||||||||||| |||||||| ||||||||  ||||||||||||    
T  3101697 gtgttctttgtttgcgtttatcgtatctgtttacttttgaaccag 3101741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 266
Target Start/End: Complemental strand, 22011979 - 22011868
Alignment:
Q  155 acaggcctgcattggatcaagaagttgtagtgttggagtatcaactgatacattcggagacccttgtagaggagtaccgaaaagtttagctgttgaagct 254  Q
    |||||||||||||||||| || ||||||| | |||||||||||| | ||||||| ||| | || ||  |||||||| | || || |||||||||||||||    
T  22011979 acaggcctgcattggatcgagcagttgtaatattggagtatcaattaatacatttggaaatccatgccgaggagtaacaaagagcttagctgttgaagct 22011880  T
Q  255 acttgtgcatag 266  Q
     ||||| |||||    
T  22011879 gcttgtacatag 22011868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 48598431 - 48598487
Alignment:
Q  6 acccgagctctaacatatcaaatgtccccacatccttttaccatatgagttgtactt 62  Q
    ||||| |||||| ||||||||||| ||| ||| ||||||||||| ||||||||||||    
T  48598431 acccgcgctctagcatatcaaatgaccctacagccttttaccatctgagttgtactt 48598487  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 7326652 - 7326607
Alignment:
Q  16 taacatatcaaatgtccccacatccttttaccatatgagttgtact 61  Q
    |||||||||||||||||   || |||||||||||||||||||||||    
T  7326652 taacatatcaaatgtccatgcaaccttttaccatatgagttgtact 7326607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 7947492 - 7947443
Alignment:
Q  22 atcaaatgtccccacatccttttaccatatgagttgtacttacgggacaa 71  Q
    |||||||||| || ||  |||||||||||||||||||||||||| |||||    
T  7947492 atcaaatgtctcctcagtcttttaccatatgagttgtacttacgcgacaa 7947443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 17127250 - 17127302
Alignment:
Q  19 catatcaaatgtccccacatccttttacca-tatgagttgtacttacgggaca 70  Q
    ||||||||||||||| |||||||||||||| | |||||||| |||| ||||||    
T  17127250 catatcaaatgtccctacatccttttaccattttgagttgttcttatgggaca 17127302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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