View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8492_low_23 (Length: 231)

Name: NF8492_low_23
Description: NF8492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8492_low_23
NF8492_low_23
[»] chr3 (5 HSPs)
chr3 (153-216)||(35916323-35916386)
chr3 (153-216)||(35922589-35922652)
chr3 (153-216)||(35911933-35911996)
chr3 (179-216)||(35929261-35929298)
chr3 (179-216)||(35941454-35941491)


Alignment Details
Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 35916386 - 35916323
Alignment:
Q  153 aaatagttagaaaattatgatatgttgaaaccaagttgagaacaagatgaagaaggtttctctt 216  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35916386 aaatagttagaaacttatgatatattgaaaccaagttgagaacaagatgaagaaggtttctctt 35916323  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 35922652 - 35922589
Alignment:
Q  153 aaatagttagaaaattatgatatgttgaaaccaagttgagaacaagatgaagaaggtttctctt 216  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35922652 aaattgttagaaacttatgatatgttgaaaccaagttgagaacaagatgaagaaggtttctctt 35922589  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 153 - 216
Target Start/End: Complemental strand, 35911996 - 35911933
Alignment:
Q  153 aaatagttagaaaattatgatatgttgaaaccaagttgagaacaagatgaagaaggtttctctt 216  Q
    ||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  35911996 aaatagttagaaacttatgatatattgaagccaagttgagaacaagatgaagaaggtttctctt 35911933  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 35929298 - 35929261
Alignment:
Q  179 gaaaccaagttgagaacaagatgaagaaggtttctctt 216  Q
    |||||||||||||||| |||||||||||||||||||||    
T  35929298 gaaaccaagttgagaataagatgaagaaggtttctctt 35929261  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 35941491 - 35941454
Alignment:
Q  179 gaaaccaagttgagaacaagatgaagaaggtttctctt 216  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  35941491 gaaatcaagttgagaacaagatggagaaggtttctctt 35941454  T

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