View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8492_low_24 (Length: 225)

Name: NF8492_low_24

Description: NF8492

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF8492_low_24

[»] chr7 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 189; E-Value: 1e-102

Query Start/End: Original strand, 18 - 210

Target Start/End: Original strand, 25338526 - 25338718

Alignment:

Q	18	tatgtaagtgtattaaacaatgaatacattcttttgtagtttcaatccagtgttagctctcaaaaaacttcaagggaaaagactactatttgtaggggat	117	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	25338526	tatgttagtgtattaaacaatgaatacattcttttgtagtttcaatccagtgttagctctcaaaaaacttcaagggaaaagactactatttgtaggggat	25338625	T

Q	118	tcacttcaaagaaatcaatgggaatcttttgtatgtttggtagaatggatcatacctcaaaatcagaaatctatgaaaagaggggttgttcat	210	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	25338626	tcacttcaaagaaatcaatgggaatcttttgtatgtttggtagaatggatcatacctcaaaatcagaaatctatgaaaagaggggttgttcat	25338718	T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 42; E-Value: 0.000000000000005

Query Start/End: Original strand, 61 - 158

Target Start/End: Original strand, 5230934 - 5231031

Alignment:

Q	61	aatccagtgttagctctcaaaaaacttcaagggaaaagactactatttgtaggggattcacttcaaagaaatcaatgggaatcttttgtatgtttggt	158	Q
		\|\|\|\|\|\|\| \| \|\|\|\| \|\|\|\|\|\|\|\| \|\|\| \|\|\|\| \|\| \|\| \| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|
T	5230934	aatccagagatagccctcaaaaagcttgaaggaaagaggttgctatttgtaggagattcacttcaaagaaaccaatgggaatcatttgtttgtttggt	5231031	T

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