View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8492_low_3 (Length: 452)
Name: NF8492_low_3
Description: NF8492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8492_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 20 - 436
Target Start/End: Complemental strand, 34494978 - 34494563
Alignment:
| Q |
20 |
tattagtaaaagattcaacaagaaattaaaagttatatcaaaatatatgacaagtaataaccataaacaggtctcttaaaagacttattttatgtcttta |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34494978 |
tattagtaaaagattcaacaagaaattaaaagttatatcaaaatatatgacaagtaataaccataaacaggtctcttaaaagacttattttatgtcttta |
34494879 |
T |
|
| Q |
120 |
atattattgacaattaaaatgttaagagcaacttttcttaccccatattaataaaccacacatggttccagaaagtatacttcttgaggtataattttgc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34494878 |
atattattgacaattaaaatgttaagagcaacttttcttaccccatattaataaaccacacatggttccagaaagtatacttcttgaggtataattttgc |
34494779 |
T |
|
| Q |
220 |
ccagaaatatactttctcatgactcaannnnnnnnnnnatacttttacatccaaagtcattttggggtggaaaagttcatcccttcatactgagaacttc |
319 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34494778 |
ccagaaatatactttctcatgactcaa-ttttttttttatacttttacatccaaagtcattttggggtggaaaagttcatcccttcatactgagaacttc |
34494680 |
T |
|
| Q |
320 |
taattggtaaattttattcagtttaggggattttgctaagcacctgcactcatacatgataaaaatgggttatggtttccagataaagaggataaacctc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34494679 |
taattggtaaattttattcagtttaggggattttgctaagcacctgcactcatacatgataaaaatgggttatggtttccagataaagaggataaacctc |
34494580 |
T |
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| Q |
420 |
accttgtttcaaaaatg |
436 |
Q |
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| T |
34494579 |
accttgtttcaaaaatg |
34494563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 20 - 434
Target Start/End: Original strand, 31507746 - 31508160
Alignment:
| Q |
20 |
tattagtaaaagattcaacaagaaattaaaagttata---tcaaaatatatgacaagtaataaccataaacaggtctcttaaaagacttattttatgtct |
116 |
Q |
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|||||||| ||||| ||| | ||||| |||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31507746 |
tattagtataagatgcaatatgaaatcaaaatttataccatcaaattatatgacaaggaataaccataaacaggtctcttaaaagacttattttttgtct |
31507845 |
T |
|
| Q |
117 |
ttaatattattgacaattaaaatgttaagagcaacttttcttaccccatattaataaaccacacatggttccagaaagtatacttcttgaggtataattt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
31507846 |
ttaatattattgacaattaaaatgttaagagcaacttttcttaccccatattaa-caaccacacatggttccggaaagtatacttcttgaggtataattt |
31507944 |
T |
|
| Q |
217 |
tgcccagaaatatactttctcatgactcaannnnnnnnnnnatacttttacatccaaagtcattttggggtggaaaagttcatcccttcatactgagaac |
316 |
Q |
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|||||||||||||| ||||| |||||| | |||| ||||||||||||||||||||||||||||||||||||| |||||||| |||| || |
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| T |
31507945 |
tgcccagaaatatagtttctgatgact--aattttttttttatacgtttacatccaaagtcattttggggtggaaaagttcatgccttcataatgagcac |
31508042 |
T |
|
| Q |
317 |
ttctaattggtaaattttattcagtttaggggattttgctaagcacctgcactcatacatgataaaaatgggttatggtttccagataaagaggataaac |
416 |
Q |
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||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31508043 |
ttctaattgataaattttattcagtttagggaattttgctaagtacctgcactcatacatgataaatatgggttatggtttccagataaagaggataaac |
31508142 |
T |
|
| Q |
417 |
ctcaccttgtttcaaaaa |
434 |
Q |
| |
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||| || ||||||||||| |
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| T |
31508143 |
ctcgccgtgtttcaaaaa |
31508160 |
T |
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