View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8492_low_4 (Length: 450)
Name: NF8492_low_4
Description: NF8492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8492_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 14 - 419
Target Start/End: Original strand, 33425227 - 33425632
Alignment:
| Q |
14 |
agatgagaatcaaagctagctgcagtaagaatgacttgagggaagctagtagctgaagtgatacttccattgaagaagatcccacgtccaacattaccaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33425227 |
agatgagaatcaaagctagctgcagtaagaatgacttgagggaagctagtagctgaagtgatacttccattgaagaagatcccacgtccaacattaccaa |
33425326 |
T |
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| Q |
114 |
ttccatgaagtgcttcactccaccattcataagcagggataccaagtctaggaatgggaggagctgagttaactagttgagcaagtttctcatccaatgt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33425327 |
ttccatgaagtgcttcactccaccattcataagcagggataccaagtctaggaatgggaggagctgagttaactagttgagcaagtttctcatccaatgt |
33425426 |
T |
|
| Q |
214 |
gagtcttgaaacaaggtctttggttctttgtgtgatgggaagttttgggttgcaaaatggataggatctggttgatgggtttgaataatcacaagcaaat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33425427 |
gagtcttgaaacaaggtctttggttctttgtgtgatgggaagttttgggttgcaaaatggataggatctggttgatgggtttgaataatcacaagcaaat |
33425526 |
T |
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| Q |
314 |
ggtggtagctgagcaaggactgagtaagtgagagtgaggaaaagggaaatgatggtgacaaaggtaaaggttgatgagagggccatagtgagaagtgaga |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33425527 |
ggtggtagctgagcaaggactgagtaagtgagagtgaggaaaagggaaatgatggtgacaaaggtaaaggttgatgagagggccatagtgagaagtgaga |
33425626 |
T |
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| Q |
414 |
agtgag |
419 |
Q |
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|||||| |
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| T |
33425627 |
agtgag |
33425632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 407 - 435
Target Start/End: Original strand, 33425613 - 33425641
Alignment:
| Q |
407 |
agtgagaagtgagaagtgagtgcattatt |
435 |
Q |
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| T |
33425613 |
agtgagaagtgagaagtgagtgcattatt |
33425641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 152 - 251
Target Start/End: Original strand, 25929201 - 25929300
Alignment:
| Q |
152 |
ataccaagtctaggaatgggaggagctgagttaactagttgagcaagtttctcatccaatgtgagtcttgaaacaaggtctttggttctttgtgtgatgg |
251 |
Q |
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||||| |||| |||||||| |||||||| |||||| ||||||| | |||||||||||||||||| | ||| |||| |||||||| |||||| ||||||| |
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| T |
25929201 |
ataccgagtcgaggaatggaaggagctgtgttaacgagttgagagattttctcatccaatgtgagccgtgacacaatgtctttggctctttgagtgatgg |
25929300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 125 - 234
Target Start/End: Complemental strand, 25956489 - 25956380
Alignment:
| Q |
125 |
gcttcactccaccattcataagcagggataccaagtctaggaatgggaggagctgagttaactagttgagcaagtttctcatccaatgtgagtcttgaaa |
224 |
Q |
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|||||||||||||||| ||| | | ||||| |||| |||||||| |||||||| ||||| |||||||||||||||||||| ||||| || | ||| | |
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| T |
25956489 |
gcttcactccaccattggtaactatgtataccgagtcgaggaatggcaggagctgtattaacgagttgagcaagtttctcatctaatgtaagccgtgaca |
25956390 |
T |
|
| Q |
225 |
caaggtcttt |
234 |
Q |
| |
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||| |||||| |
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| T |
25956389 |
caatgtcttt |
25956380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 280
Target Start/End: Original strand, 25888713 - 25888841
Alignment:
| Q |
152 |
ataccaagtctaggaatgggaggagctgagttaactagttgagcaagtttctcatccaatgtgagtcttgaaacaaggtctttggttctttgtgtgatgg |
251 |
Q |
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||||| |||| |||||||| |||||||| |||||| ||||||| | |||||||||||||||||| | ||| || | |||||| | |||||| ||||||| |
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| T |
25888713 |
ataccgagtcgaggaatggcaggagctgtgttaacgagttgagagattttctcatccaatgtgagccgtgacacgatgtcttttgctctttgagtgatgg |
25888812 |
T |
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| Q |
252 |
gaagttttgggttgcaaaatggataggat |
280 |
Q |
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||| || | ||||| |||||| ||||| |
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| T |
25888813 |
taaggttgagattgcagaatggaaaggat |
25888841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 158 - 251
Target Start/End: Original strand, 25912743 - 25912836
Alignment:
| Q |
158 |
agtctaggaatgggaggagctgagttaactagttgagcaagtttctcatccaatgtgagtcttgaaacaaggtctttggttctttgtgtgatgg |
251 |
Q |
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|||| |||||||| |||||||| |||||| ||||| | | |||||||||||||||||| | ||| || | |||||||| |||||| ||||||| |
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| T |
25912743 |
agtcgaggaatggcaggagctgtgttaacgagttgggagactttctcatccaatgtgagccgtgatacgatgtctttggctctttgagtgatgg |
25912836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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