View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8492_low_5 (Length: 412)
Name: NF8492_low_5
Description: NF8492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8492_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 135; Significance: 3e-70; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 258 - 400
Target Start/End: Original strand, 52513106 - 52513247
Alignment:
| Q |
258 |
ttggtcttggagatgatggagatttgtagattccataatgataaaaatttataattgcatatactaattaagttgttaattaaaaggaaaaatgaagagg |
357 |
Q |
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| T |
52513106 |
ttggtcttggagatgatggagatttgtagattccataatgataaaa-tttataattgcatatactaattaagttgttaattaaaaggaaaaatgaagagg |
52513204 |
T |
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| Q |
358 |
atcaagctaaaggtgttggttgaaaatcccaagatgagtatta |
400 |
Q |
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| T |
52513205 |
atcaagctaaaggtgttggttgaaaatcccaagatgagtatta |
52513247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 103 - 233
Target Start/End: Original strand, 52512957 - 52513087
Alignment:
| Q |
103 |
ttagcttcatgcatatatataggaaataattaaaactaagaagtgacttacaaagtgatgtttggggtccaagagtgggtggtggttcctccaacaactc |
202 |
Q |
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| T |
52512957 |
ttagcttcatgcatatatataggaaataattaaaactaagaagtgacttacaaagtgatgtttggggtccaagagtgggtggtggtggttcctccaactg |
52513056 |
T |
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| Q |
203 |
tataggatgtggtactggataaagaagaaac |
233 |
Q |
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| T |
52513057 |
tataggatggggtactggataaagaagaaac |
52513087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 52512858 - 52512900
Alignment:
| Q |
18 |
aaatgatcatctcgttaattctacatgatagagagttccacat |
60 |
Q |
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| T |
52512858 |
aaatgatcatctagttaattctacaggatagagagttccacat |
52512900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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