View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8492_low_6 (Length: 391)
Name: NF8492_low_6
Description: NF8492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8492_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 20 - 369
Target Start/End: Original strand, 34737635 - 34737984
Alignment:
| Q |
20 |
ctctgtgaataattgaatccattttttggtaacaaatcttagacagtaaagacaaccataacattcatggataattcaatagataaaattaaagtgtgaa |
119 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34737635 |
ctctatgaataattgaatccattttttggtaacaaatcttagacagtaaagacaaccataacattcatggataattcaatagataaaattaaagtgtgaa |
34737734 |
T |
|
| Q |
120 |
ggtgaagaaatatcacctaggattagggtttcctctgccaactcgttgcccgtattttctccaattatatccatcgtctaagacatcaatctcactggtt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34737735 |
ggtgaagaaatatcacctaggattagggtttcctctagcaactcgttgcccgtattttctccaattatatccatcgtctaagacatcaatctcaatggtt |
34737834 |
T |
|
| Q |
220 |
gttattatgatatttctaggttctctagaagacctatatgaagaagctatttgatttaagaccgcgatttctgtatttctgcaaaatcaaaacaatagca |
319 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||||||| ||||||||||||||| ||| ||||||| |||||||| |||||||||||||||| |||||||||| |
|
|
| T |
34737835 |
gttattatgatattcctaggctctctggaagacctgtatgaagaagctattcgatataagaccacgatttctatatttctgcaaaatcacaacaatagca |
34737934 |
T |
|
| Q |
320 |
agattacataaatgaatatgattatccactataaacatatatgcgtttac |
369 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
34737935 |
agattacataaaagaaaatgattatccactataaacatatatgcgtttac |
34737984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 25 - 369
Target Start/End: Original strand, 34746954 - 34747298
Alignment:
| Q |
25 |
tgaataattgaatccattttttggtaacaaatcttagacagtaaagacaaccataacattcatggataattcaatagataaaattaaagtgtgaaggtga |
124 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||| || |||| ||||||||||||||||||||||| ||||||||||||| |||||| |||||| || |
|
|
| T |
34746954 |
tgaataattgaactcatttttttgtaacaaatcttatacgataaacacaaccataacattcatggataactcaatagataaaactaaagtatgaaggaga |
34747053 |
T |
|
| Q |
125 |
agaaatatcacctaggattagggtttcctctgccaactcgttgcccgtattttctccaattatatccatcgtctaagacatcaatctcactggttgttat |
224 |
Q |
| |
|
|| |||||||||||||||||||||||||| ||| |||| ||| ||||||||||||||||||||| ||||| ||||||| |||||||| ||||||||||| |
|
|
| T |
34747054 |
agcaatatcacctaggattagggtttcctatgcaaacttgttccccgtattttctccaattatacccatcttctaagagatcaatcttgctggttgttat |
34747153 |
T |
|
| Q |
225 |
tatgatatttctaggttctctagaagacctatatgaagaagctatttgatttaagaccgcgatttctgtatttctgcaaaatcaaaacaatagcaagatt |
324 |
Q |
| |
|
||| | ||||||| ||||| | |||||||||||||||| ||||||||||||||| |||||| |||| ||||||||||||||| ||||||| ||||||| |
|
|
| T |
34747154 |
tatatttattctaggctctctgggagacctatatgaagaacctatttgatttaagatcgcgatctctggatttctgcaaaatcacaacaatatcaagatt |
34747253 |
T |
|
| Q |
325 |
acataaatgaatatgattatccactataaacatatatgcgtttac |
369 |
Q |
| |
|
||||||| ||| ||||||| |||| | |||||||| ||| ||||| |
|
|
| T |
34747254 |
acataaaagaaaatgattacccacgacaaacatatttgcatttac |
34747298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 96 - 218
Target Start/End: Original strand, 18875540 - 18875661
Alignment:
| Q |
96 |
caatagataaaattaaagtgtgaaggtgaagaaatatcacctaggattagggtttcctctgccaactcgttgcccgtattttctccaattatatccatcg |
195 |
Q |
| |
|
|||||| | ||||||||||||||||| ||| | ||||||||||||| |||||||||| || ||||| || || ||||||| ||| |||| ||||| |
|
|
| T |
18875540 |
caataggtgaaattaaagtgtgaaggaaaagca-tatcacctaggataagggtttcctttgacaactttctgtccatattttcgccatctataaccatca |
18875638 |
T |
|
| Q |
196 |
tctaagacatcaatctcactggt |
218 |
Q |
| |
|
||||||| ||||| |||||||| |
|
|
| T |
18875639 |
tctaagagatcaacttcactggt |
18875661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University