View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8493_high_16 (Length: 240)

Name: NF8493_high_16
Description: NF8493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8493_high_16
NF8493_high_16
[»] chr1 (2 HSPs)
chr1 (7-225)||(35243031-35243249)
chr1 (7-239)||(35231391-35231623)
[»] chr6 (10 HSPs)
chr6 (44-179)||(6523441-6523576)
chr6 (51-179)||(6526420-6526548)
chr6 (44-167)||(6465393-6465516)
chr6 (45-179)||(6528241-6528381)
chr6 (51-106)||(1841891-1841946)
chr6 (51-142)||(6461823-6461914)
chr6 (51-142)||(6496758-6496849)
chr6 (51-179)||(6505528-6505656)
chr6 (51-179)||(13035744-13035872)
chr6 (8-41)||(13035692-13035725)
[»] chr7 (1 HSPs)
chr7 (51-179)||(9665301-9665435)
[»] chr4 (1 HSPs)
chr4 (51-179)||(13536325-13536459)


Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 7 - 225
Target Start/End: Original strand, 35243031 - 35243249
Alignment:
Q  7 ggacatcatcttatttttatggaaaattgatagcatagttggctttgatagctgaagaggtttgtttccttgatgtgattccaaaagttaagaagtattt 106  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35243031 ggacttcatcttatttttatggaaaattgattgcatagttggctttgatagctgaagaggtttgtttctttgatgtgattccaaaagttaagaagtattt 35243130  T
Q  107 gaaagaggtcattgagctttggcttgatggaactttcaaagaaaatgaatttgtatatgatcaagaatggggaagagtggttacaaatgaaggatgttct 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35243131 gaaagaggtcattgagctttggcttgatggaactttcaaagaaaatgaatttgtatatgatcaagaatggggaagagtggttacaaatgaaggatgttct 35243230  T
Q  207 gactctagttatgattttg 225  Q
    |||||||||||||||||||    
T  35243231 gactctagttatgattttg 35243249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 7 - 239
Target Start/End: Original strand, 35231391 - 35231623
Alignment:
Q  7 ggacatcatcttatttttatggaaaattgatagcatagttggctttgatagctgaagaggtttgtttccttgatgtgattccaaaagttaagaagtattt 106  Q
    |||| |||||||||||||||||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35231391 ggacttcatcttatttttatggaaaattgattgcaaggttggctttgatagctgaagaggtttgtttccttgatgtgattccaaaagttaagaagtattt 35231490  T
Q  107 gaaagaggtcattgagctttggcttgatggaactttcaaagaaaatgaatttgtatatgatcaagaatggggaagagtggttacaaatgaaggatgttct 206  Q
    ||||||| ||||||||| ||||||||||||| || |||||||||||| |||| |||||||||| |||||| ||  ||| ||||||||  |||||||||||    
T  35231491 gaaagagatcattgagccttggcttgatggagctatcaaagaaaatggatttctatatgatcaggaatggagagtagttgttacaaaacaaggatgttct 35231590  T
Q  207 gactctagttatgattttggatctgaatcttat 239  Q
    || ||||||||||||||||||||||||| ||||    
T  35231591 gattctagttatgattttggatctgaattttat 35231623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 8e-45; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 44 - 179
Target Start/End: Complemental strand, 6523576 - 6523441
Alignment:
Q  44 gttggctttgatagctgaagaggtttgtttccttgatgtgattccaaaagttaagaagtatttgaaagaggtcattgagctttggcttgatggaactttc 143  Q
    ||||||||  ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||    
T  6523576 gttggcttcaatagctgaagaggtttgtttccttgatgtgatttcaaaagttaaaaagtatttgaaagagatcattgagccttggcttgatggaactttc 6523477  T
Q  144 aaagaaaatgaatttgtatatgatcaagaatgggga 179  Q
    ||| |||||| |||| ||||||||||  ||||||||    
T  6523476 aaataaaatggatttctatatgatcagaaatgggga 6523441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 51 - 179
Target Start/End: Complemental strand, 6526548 - 6526420
Alignment:
Q  51 ttgatagctgaagaggtttgtttccttgatgtgattccaaaagttaagaagtatttgaaagaggtcattgagctttggcttgatggaactttcaaagaaa 150  Q
    |||||||| |||||||||||||||||||||||||||||||||||||  ||||||||||| ||   |||||||| |||||||||||||||||| || | ||    
T  6526548 ttgatagcggaagaggtttgtttccttgatgtgattccaaaagttagaaagtatttgaaggaaaccattgagccttggcttgatggaacttttaatggaa 6526449  T
Q  151 atgaatttgtatatgatcaagaatgggga 179  Q
    ||| |||| | |||||| || ||||||||    
T  6526448 atggatttctttatgataaaaaatgggga 6526420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 44 - 167
Target Start/End: Complemental strand, 6465516 - 6465393
Alignment:
Q  44 gttggctttgatagctgaagaggtttgtttccttgatgtgattccaaaagttaagaagtatttgaaagaggtcattgagctttggcttgatggaactttc 143  Q
    |||||||||||| |||||||||||||||||||||||||||||||| ||| ||| ||||| |||||| ||    ||||||| ||||||||||||||||||     
T  6465516 gttggctttgattgctgaagaggtttgtttccttgatgtgattccgaaaattaggaagtttttgaaggaaactattgagccttggcttgatggaactttt 6465417  T
Q  144 aaagaaaatgaatttgtatatgat 167  Q
    || | ||||| |||| | ||||||    
T  6465416 aatggaaatggatttctctatgat 6465393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 45 - 179
Target Start/End: Complemental strand, 6528381 - 6528241
Alignment:
Q  45 ttggctttgatagctgaagaggtttgtttccttgatgtgattccaaaagttaag------aagtatttgaaagaggtcattgagctttggcttgatggaa 138  Q
    ||||||||||||||||||||| ||| ||||  ||||||||||||||| ||||||      ||||||||||| ||| | ||||||| ||||||||||||||    
T  6528381 ttggctttgatagctgaagagatttttttctatgatgtgattccaaaggttaaggttaagaagtatttgaaggagatgattgagccttggcttgatggaa 6528282  T
Q  139 ctttcaaagaaaatgaatttgtatatgatcaagaatgggga 179  Q
    |||||||||  |||| |||| | |||||| || ||||||||    
T  6528281 ctttcaaaggtaatggatttctctatgataaaaaatgggga 6528241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 51 - 106
Target Start/End: Original strand, 1841891 - 1841946
Alignment:
Q  51 ttgatagctgaagaggtttgtttccttgatgtgattccaaaagttaagaagtattt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  1841891 ttgatagctgaagaggtttgtttccttgatgtgattccaaaagttagaaagtattt 1841946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 142
Target Start/End: Original strand, 6461823 - 6461914
Alignment:
Q  51 ttgatagctgaagaggtttgtttccttgatgtgattccaaaagttaagaagtatttgaaagaggtcattgagctttggcttgatggaacttt 142  Q
    ||||||||||||||||||| || | | |||||||||||||| |||||||||| ||| |||||   |||||||| |||| | |||||||||||    
T  6461823 ttgatagctgaagaggtttcttacttagatgtgattccaaaggttaagaagtttttaaaagaaaccattgagccttggttagatggaacttt 6461914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 142
Target Start/End: Complemental strand, 6496849 - 6496758
Alignment:
Q  51 ttgatagctgaagaggtttgtttccttgatgtgattccaaaagttaagaagtatttgaaagaggtcattgagctttggcttgatggaacttt 142  Q
    |||||||| ||||||||||  | | | |||||||||||||| |||||||||| |||||||||   |||||||| |||| | |||||||||||    
T  6496849 ttgatagccgaagaggtttcatacttagatgtgattccaaaggttaagaagtttttgaaagaaaccattgagccttggttagatggaacttt 6496758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 179
Target Start/End: Complemental strand, 6505656 - 6505528
Alignment:
Q  51 ttgatagctgaagaggtttgtttccttgatgtgattccaaaagttaagaagtatttgaaagaggtcattgagctttggcttgatggaactttcaaagaaa 150  Q
    |||||||||||||||||||  ||| ||||||  |||  |||||| |  || | |||||| ||   |||||||| |||||||||||||||||| || | ||    
T  6505656 ttgatagctgaagaggttttcttctttgatgctattgaaaaagtaagaaactttttgaaggaaaccattgagccttggcttgatggaacttttaatggaa 6505557  T
Q  151 atgaatttgtatatgatcaagaatgggga 179  Q
    ||| |||| |||||||| || ||||||||    
T  6505556 atggatttctatatgataaaaaatgggga 6505528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 179
Target Start/End: Original strand, 13035744 - 13035872
Alignment:
Q  51 ttgatagctgaagaggtttgtttccttgatgtgattccaaaagttaagaagtatttgaaagaggtcattgagctttggcttgatggaactttcaaagaaa 150  Q
    |||||| ||||||||||   || ||||||||  |||||||  || |||||||| ||||| ||   |||||||| |||||||||||||||||| || | ||    
T  13035744 ttgataactgaagaggtgaattaccttgatgcaattccaattgtgaagaagtacttgaaggaatccattgagccttggcttgatggaacttttaatggaa 13035843  T
Q  151 atgaatttgtatatgatcaagaatgggga 179  Q
    ||| |||| | |||||| || ||||||||    
T  13035844 atggatttctctatgataaaaaatgggga 13035872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 13035692 - 13035725
Alignment:
Q  8 gacatcatcttatttttatggaaaattgatagca 41  Q
    |||||||||||| |||||||||||||||||||||    
T  13035692 gacatcatcttacttttatggaaaattgatagca 13035725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 179
Target Start/End: Original strand, 9665301 - 9665435
Alignment:
Q  51 ttgatagctgaagaggtttgtttccttgatgtgattccaaaagttaaga------agtatttgaaagaggtcattgagctttggcttgatggaactttca 144  Q
    |||||||||||||| |||| |||| ||||| || ||||||| |||||||      ||| |||||||||    ||||| |  ||| |||||||||||||||    
T  9665301 ttgatagctgaagacgtttttttctttgatatggttccaaatgttaagattaagaagtttttgaaagaaactattgaaccgtggtttgatggaactttca 9665400  T
Q  145 aagaaaatgaatttgtatatgatcaagaatgggga 179  Q
    ||||||||| |||| | ||||||||  ||||||||    
T  9665401 aagaaaatggatttctgtatgatcagaaatgggga 9665435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 179
Target Start/End: Original strand, 13536325 - 13536459
Alignment:
Q  51 ttgatagctgaagaggtttgtttccttgatgtgattccaaaagttaaga------agtatttgaaagaggtcattgagctttggcttgatggaactttca 144  Q
    |||||||||||||| |||| |||| ||||| || ||||||| |||||||      ||| |||||||||    ||||| |  ||| |||||||||||||||    
T  13536325 ttgatagctgaagacgtttttttctttgatatggttccaaatgttaagattaagaagtttttgaaagaaactattgaaccgtggtttgatggaactttca 13536424  T
Q  145 aagaaaatgaatttgtatatgatcaagaatgggga 179  Q
    ||||||||| |||| | ||||||||  ||||||||    
T  13536425 aagaaaatggatttctgtatgatcagaaatgggga 13536459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University