View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8493_high_6 (Length: 371)
Name: NF8493_high_6
Description: NF8493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8493_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 18 - 366
Target Start/End: Original strand, 32348529 - 32348875
Alignment:
| Q |
18 |
aatacgaagaaaaacaatagagtataattattgaagggttgaatacaaacagataaagcaaaagtaaaggcatatagtagaaacatagtatcaagatatg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32348529 |
aatacgaagaaaaacaatagagtataattattgaagggttgaatacaaacagataaagcaaaagtaaaggcatatagtagaaacatagtatcaagatatg |
32348628 |
T |
|
| Q |
118 |
tgaagtgcaatggaaaaagtaggaacgaaccagttggcatgatgaggaaggtgttgaatctgaatattaaacctggggatatccttgaagcagctccctc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32348629 |
tgaagtgcaatggaaaaagtaggaacgaaccagttggaatgatgaggaaggtgttgaatctgaatattaaacct--ggatatccttgaagcagctccctc |
32348726 |
T |
|
| Q |
218 |
actcttgcttggacacctcttatatcaattatttcagccttgaaatcttttatgagttttaaaaactcatcatactttaacatgttatcatgcttagatg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32348727 |
actcttgcttggacacctcttatatcaattatttcagccttgaaatcttttatgagttttaaaaactcatcatactttaacatgttatcatgcttagatg |
32348826 |
T |
|
| Q |
318 |
caagtttgacttccttaagaagagactcaagtgcataatgatgtccatc |
366 |
Q |
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| T |
32348827 |
caagtttgacttccttaagaagagactcaagtgcataatcatggccatc |
32348875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 142 - 353
Target Start/End: Complemental strand, 31264009 - 31263800
Alignment:
| Q |
142 |
acgaaccagttggcatgatgaggaaggtgttgaatctgaatattaaacctggggatatccttgaagcagctccctcactcttgcttggacacctcttata |
241 |
Q |
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| T |
31264009 |
acgaaccagctggcatgatgaggaaggtcttgaatccgaataataaaccctg--atgcctttgaagcagcaccctcacccttgattggacgcctcgtata |
31263912 |
T |
|
| Q |
242 |
tcaattatttcagccttgaaatcttttatgagttttaaaaactcatcatactttaacatgttatcatgcttagatgcaagtttgacttccttaagaagag |
341 |
Q |
| |
|
|||||| || |||||||||||||| |||||||||||||||||||||| ||||||| ||||||| | | |||||||||||| ||| |||||| |||| |
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| T |
31263911 |
tcaattcttccagccttgaaatctcttatgagttttaaaaactcatcgtactttatgctgttatcgtaccgagatgcaagtttcactcccttaacaagat |
31263812 |
T |
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| Q |
342 |
actcaagtgcat |
353 |
Q |
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|||| ||||||| |
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| T |
31263811 |
actccagtgcat |
31263800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 287
Target Start/End: Complemental strand, 14961485 - 14961399
Alignment:
| Q |
200 |
ccttgaagcagctccctcactcttgcttggacacctcttatatcaattatttcagccttgaaatcttttatgagttttaaaaactcat |
287 |
Q |
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|||| |||||||||| | |||||||| ||||||||||||||||||| ||| | |||||||||||||||||| ||||||||| |||| |
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| T |
14961485 |
cctttaagcagctccttgactcttgcagcgacacctcttatatcaattcttt-atccttgaaatcttttatgacttttaaaaagtcat |
14961399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 154
Target Start/End: Complemental strand, 41183501 - 41183460
Alignment:
| Q |
113 |
atatgtgaagtgcaatggaaaaagtaggaacgaaccagttgg |
154 |
Q |
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||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
41183501 |
atatgtgaagtgcaatggaaaaagtagtaactaaccagttgg |
41183460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 49441923 - 49441973
Alignment:
| Q |
20 |
tacgaagaaaaacaatagagtataattattgaagggttgaatacaaacaga |
70 |
Q |
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||||||||||| ||||||||| |||||||||||||||||| | ||||||| |
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| T |
49441923 |
tacgaagaaaagcaatagagtggaattattgaagggttgaaaataaacaga |
49441973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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