View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8493_low_1 (Length: 463)
Name: NF8493_low_1
Description: NF8493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8493_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 20 - 454
Target Start/End: Complemental strand, 40548694 - 40548260
Alignment:
| Q |
20 |
catctcgcacttgacttcgcaccgatagctttaaataagaacaaatacatattttagtctatgaaaaaatacggtatctaatttaatctctcgtaacnnn |
119 |
Q |
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| T |
40548694 |
catctcgcacttgacttcgcaccgatagctttaaataagaacaaatacctattttagtctatgaaaaaatacggtatctaatttaatctctcgtaacaaa |
40548595 |
T |
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| Q |
120 |
nnnntatcgatagaatagtcttttaaaattaccagttcagacacattaattcctagttataaattttacacccaaaataaatcttctctaaaatattaaa |
219 |
Q |
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| T |
40548594 |
aaaatatcgatagaatagtcttttaaaattaccagttcagacacattaattcctagttataaattttacacccaaaataaatcttctctaaaatattaaa |
40548495 |
T |
|
| Q |
220 |
atgagtctttactcttaaattatgtagtatgagatagaaaattgagtacctacctaatgagctcagtttgaagtgcatgaccttggttagttcttctatg |
319 |
Q |
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| T |
40548494 |
atgagtctttactcttaaattatgtagtatgggatagaaaattgagtacctacctaatgagctcagtttgaagtgcatgaccttggttagttcttctatg |
40548395 |
T |
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| Q |
320 |
ggatgttgaaccaaagccagtagtgacgccataaaaatcagtacctttattgatactctccatcacccactcactactctccttaactctaacccttgcc |
419 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40548394 |
ggatgttgaaccaaagccagtagtgacaccataaaaatcagtacctttattgatactctccatcacccactcactactctccttaactctaacccttgcc |
40548295 |
T |
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| Q |
420 |
tgctcattcagctctacggccgccaacctctctgc |
454 |
Q |
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| T |
40548294 |
tgctcattcagctctacggccgccaacctctctgc |
40548260 |
T |
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