View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8493_low_10 (Length: 374)

Name: NF8493_low_10
Description: NF8493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8493_low_10
NF8493_low_10
[»] chr8 (5 HSPs)
chr8 (160-358)||(4638632-4638830)
chr8 (29-130)||(40504859-40504960)
chr8 (160-217)||(32574513-32574570)
chr8 (157-216)||(6580385-6580443)
chr8 (160-216)||(32448452-32448508)
[»] chr6 (3 HSPs)
chr6 (159-217)||(1619825-1619883)
chr6 (160-216)||(22822669-22822724)
chr6 (155-217)||(18990045-18990107)
[»] chr7 (2 HSPs)
chr7 (168-216)||(12936018-12936066)
chr7 (169-217)||(49018479-49018527)
[»] chr4 (1 HSPs)
chr4 (161-216)||(1975516-1975572)
[»] chr3 (1 HSPs)
chr3 (160-192)||(23059548-23059580)


Alignment Details
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 160 - 358
Target Start/End: Complemental strand, 4638830 - 4638632
Alignment:
Q  160 atctactaaactatataggacaatttttgtcccagttttttacaattttgcccttata------tttaggtaaattagaaaatgctctcttttcccnnnn 253  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||      |||||||||||||||||||||||||||| |||        
T  4638830 atctactaaactatataggacaatttttgtccctgttttttacaattttgcccttataggggtatttaggtaaattagaaaatgctctctttcccctata 4638731  T
Q  254 nnnnnnnnngtgtgttgttgtgccatttcaatttctctactcccactccttcatttagttcattccctcccactacctcattcatgtctttcatcacttg 353  Q
              || |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  4638730 tata------tgagttgttgtgccatttcaatttctctactcccactacttcatttcgttcattccctcccactacctcattcatgtctttcatcacttg 4638637  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 29 - 130
Target Start/End: Complemental strand, 40504960 - 40504859
Alignment:
Q  29 atcgtgttatcgtcatagttcatgaaacaatcacaagtacaaaaacagtttcaaannnnnnncactaattaatttggtcaccatttatattttacctttg 128  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  40504960 atcgtgttatcgtcatagttcatgaatcaatcacaagtacaaaaacagtttcaaatgtttttcactaattaatttggtcaccatttatattttacctttg 40504861  T
Q  129 tt 130  Q
    ||    
T  40504860 tt 40504859  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 32574570 - 32574513
Alignment:
Q  160 atctactaaactatataggacaatttttgtcccagttttttacaattttgcccttata 217  Q
    ||||||||||||||||||||||||| ||||||   |||||||| ||||||||||||||    
T  32574570 atctactaaactatataggacaattcttgtccattttttttaccattttgcccttata 32574513  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 157 - 216
Target Start/End: Complemental strand, 6580443 - 6580385
Alignment:
Q  157 tctatctactaaactatataggacaatttttgtcccagttttttacaattttgcccttat 216  Q
    ||||||||||  ||||||||||||||| ||||||||  |||||||| |||||||||||||    
T  6580443 tctatctactttactatataggacaatctttgtccc-tttttttaccattttgcccttat 6580385  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 32448508 - 32448452
Alignment:
Q  160 atctactaaactatataggacaatttttgtcccagttttttacaattttgcccttat 216  Q
    |||||||| ||||| ||||||||| ||||||||  ||||| || |||||||||||||    
T  32448508 atctactatactatgtaggacaatctttgtccctttttttgaccattttgcccttat 32448452  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 159 - 217
Target Start/End: Complemental strand, 1619883 - 1619825
Alignment:
Q  159 tatctactaaactatataggacaatttttgtcccagttttttacaattttgcccttata 217  Q
    |||||||||||||||||||||||||| ||||||   |||||||| ||||||||||||||    
T  1619883 tatctactaaactatataggacaattcttgtccattttttttaccattttgcccttata 1619825  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 160 - 216
Target Start/End: Complemental strand, 22822724 - 22822669
Alignment:
Q  160 atctactaaactatataggacaatttttgtcccagttttttacaattttgcccttat 216  Q
    |||||||| ||||||||||||||||||||| ||| |||||||| |||||||||||||    
T  22822724 atctactatactatataggacaatttttgt-ccatttttttaccattttgcccttat 22822669  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 217
Target Start/End: Complemental strand, 18990107 - 18990045
Alignment:
Q  155 aatctatctactaaactatataggacaatttttgtcccagttttttacaattttgcccttata 217  Q
    |||||||||||||||||||||||||||||   |||||   ||||||||  |||||||||||||    
T  18990107 aatctatctactaaactatataggacaatcaatgtccattttttttacttttttgcccttata 18990045  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 12936018 - 12936066
Alignment:
Q  168 aactatataggacaatttttgtcccagttttttacaattttgcccttat 216  Q
    |||||||||||||||| ||||||||  ||||| || |||||||||||||    
T  12936018 aactatataggacaatctttgtccctttttttgaccattttgcccttat 12936066  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 49018479 - 49018527
Alignment:
Q  169 actatataggacaatttttgtcccagttttttacaattttgcccttata 217  Q
    ||||||||||||||| ||||||||  ||||| || ||||||||||||||    
T  49018479 actatataggacaatctttgtccctttttttgaccattttgcccttata 49018527  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 1975572 - 1975516
Alignment:
Q  161 tctactaaactatataggacaatttttgtcc-cagttttttacaattttgcccttat 216  Q
    |||||||||||||||||||||||| ||||||    |||||||| |||||||||||||    
T  1975572 tctactaaactatataggacaattcttgtccatttttttttactattttgcccttat 1975516  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 192
Target Start/End: Original strand, 23059548 - 23059580
Alignment:
Q  160 atctactaaactatataggacaatttttgtccc 192  Q
    ||||||||||||||||||||||||| |||||||    
T  23059548 atctactaaactatataggacaattcttgtccc 23059580  T

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