View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8493_low_12 (Length: 361)
Name: NF8493_low_12
Description: NF8493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8493_low_12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 32185390 - 32185030
Alignment:
| Q |
1 |
aaaactaaaatttagtgctcgaatgaatctccaaaatttaaagtaatccnnnnnnnttaaatgagagaatttcactgcttgttatgggtgtaacatcata |
100 |
Q |
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| T |
32185390 |
aaaactaaaatttagtgctcgaatgaatctccaaaatttaaagtaatccaaaaaaattaattgagagaatttcactgcttgttatgggtgtaacatcata |
32185291 |
T |
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| Q |
101 |
tagaagagacaagtaaattaactatagcatttgttgatattcttcagtattagtgggtacaaaattagaatagtacatattccgtcatcaattttccaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32185290 |
tagaagagacaagtaaattaactatagcatttgttgatattcttcagtattagtgggtacaaaattagaatagtacatattccgtcctcaattttccaat |
32185191 |
T |
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| Q |
201 |
atcaattgaatgtagataatttagtagtatataacgttatttcaatgtgctggagtatgagataatgtagcacttatatttcaaagtgcacttatattac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32185190 |
atcaattgaatgtagataatttagtagtatataacgttatttcaatgtgctggagtatgagataatgtagcacttatatttcaaagtgcacttatattac |
32185091 |
T |
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| Q |
301 |
agaactattatcgtttgtgaagagaaatattcaaaactttcaattgtgattatgtcctacc |
361 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32185090 |
agaactattatcgtttgtgaagagaaatattcaaaacattcaattgtgattatgtcctacc |
32185030 |
T |
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