View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8493_low_13 (Length: 360)

Name: NF8493_low_13
Description: NF8493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8493_low_13
NF8493_low_13
[»] chr2 (6 HSPs)
chr2 (11-360)||(30469634-30469983)
chr2 (11-138)||(30431568-30431700)
chr2 (134-199)||(30431678-30431743)
chr2 (142-211)||(30437967-30438035)
chr2 (11-70)||(30425535-30425594)
chr2 (11-49)||(30437823-30437861)


Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 11 - 360
Target Start/End: Original strand, 30469634 - 30469983
Alignment:
Q  11 ataattctacataaactggaattgtaaaatttataattttcttatttccttattagaatgcttgtaatattgctgataaaacaatactcttatgatgtaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30469634 ataattctacataaactggaattgtaaaatttataattttcttatttccttattagaatgcttgtaatattgctgataaaacaatactcttatgatgtaa 30469733  T
Q  111 aacagaaagctcataatataataaaagatcataatataataaaagagtatttgttcggagatattaaccctttaagtggatctctatacttcgacggatt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30469734 aacagaaagctcataatataataaaagatcataatataataaaagagtatttgttcggagatattaaccctttaagtggatctctatacttcgacggatt 30469833  T
Q  211 atttttcgtcttgacgtcaaatattccttaagtacacccaaaaaactctttcaaatattatcatatgtattgagtatacatgtgataaagtaatgatgca 310  Q
    |||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30469834 atttttcgtcttgaagtcaaatattccttgagtacacccaaaaacctctttcaaatattatcatatgtattgagtatacatgtgataaagtaatgatgca 30469933  T
Q  311 tgttctaatcgtctaacatttgctctcagtttgattaaaaccaaccctgc 360  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30469934 tgttctaatcatctaacatttgctctcagtttgattaaaaccaaccctgc 30469983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 138
Target Start/End: Original strand, 30431568 - 30431700
Alignment:
Q  11 ataattctacataaactggaattgtaaaatttataattttcttatttccttattagaatgcttgtaatattgctgataaaa-----caatactcttatga 105  Q
    |||||||||| |||| ||||||||||||||||||||||| |||||| |  ||||||||||||||||||  |||| ||||||      || | || |||||    
T  30431568 ataattctacgtaaagtggaattgtaaaatttataatttgcttattccactattagaatgcttgtaatgatgcttataaaaaaaataaaaaatcctatga 30431667  T
Q  106 tgtaaaacagaaagctcataatataataaaaga 138  Q
    ||||||| |||||||||||| ||||||||||||    
T  30431668 tgtaaaatagaaagctcatagtataataaaaga 30431700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 134 - 199
Target Start/End: Original strand, 30431678 - 30431743
Alignment:
Q  134 aaagatcataatataataaaagagtatttgttcggagatattaaccctttaagtggatctctatac 199  Q
    |||| ||||| |||||||||||| ||||||||| ||||||| ||||||||||||||||| ||||||    
T  30431678 aaagctcatagtataataaaagaatatttgttctgagatatcaaccctttaagtggatccctatac 30431743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 142 - 211
Target Start/End: Original strand, 30437967 - 30438035
Alignment:
Q  142 taatataataaaagagtatttgttcggagatattaaccctttaagtggatctctatacttcgacggatta 211  Q
    ||||||||||| | ||||||||||| |||||||||||||||||||| |||||||||| ||| ||||||||    
T  30437967 taatataataataaagtatttgttcagagatattaaccctttaagt-gatctctatatttcaacggatta 30438035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 30425535 - 30425594
Alignment:
Q  11 ataattctacataaactggaattgtaaaatttataattttcttatttccttattagaatg 70  Q
    |||||||||| |||| ||||||||||||||||||||||| |||||| |  ||||||||||    
T  30425535 ataattctacgtaaagtggaattgtaaaatttataatttgcttattccactattagaatg 30425594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 30437823 - 30437861
Alignment:
Q  11 ataattctacataaactggaattgtaaaatttataattt 49  Q
    |||||||||| |||| |||||||||||||||||||||||    
T  30437823 ataattctacgtaaagtggaattgtaaaatttataattt 30437861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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