View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8493_low_14 (Length: 359)
Name: NF8493_low_14
Description: NF8493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8493_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 19 - 348
Target Start/End: Complemental strand, 44736568 - 44736239
Alignment:
| Q |
19 |
gaactaggttataaaatgacatagaaagatatattaataatatttannnnnnnacaattaagataataagagtaaaactaagagaagtaagctataaggt |
118 |
Q |
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| T |
44736568 |
gaactaggttataaaatgacatagaaagatatattaataatatatatttttttacaattaagataataagagtaaaactaagagaagtaagctataaggt |
44736469 |
T |
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| Q |
119 |
agtatttcaattagcttatcgaaaaagttaaagttagcaaaaataagttataagttcgagagaaaagaacagttattaaagaagacttttttaatcatac |
218 |
Q |
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| T |
44736468 |
agtatttcaattagcttatcaaaaaagttaaagttagcaaaaataagttataagttcgagagaaaagaacagttattaaagaagtcttttttaatcatac |
44736369 |
T |
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| Q |
219 |
gagtgttnnnnnnnttgttgaagtaacaataacctcaaaattacgaattgagccataaaaacacttaaagagtgatgagtcgttttaatctttgagaaaa |
318 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44736368 |
gagtgttaaaaaaattgttgaagtaacaataacctcaaaattacgaattgagccataaaaacaattaaagagtgatgagtcgttttaatctttgagaaaa |
44736269 |
T |
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| Q |
319 |
actgcaatatccaatttagtttctaagaat |
348 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
44736268 |
actgcaatatccaatttagtttctaagaat |
44736239 |
T |
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