View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8493_low_15 (Length: 330)
Name: NF8493_low_15
Description: NF8493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8493_low_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 314
Target Start/End: Complemental strand, 45313998 - 45313702
Alignment:
| Q |
18 |
gcgcaccaatcactgacagtgtataaaaagaattttaagaaactaatctatgttttttcaaatttaacaagtcattactgcactaagtatgtcagattat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45313998 |
gcgcaccaatcactgacagtgtataaaaagaattttaagaaactaatctatgttttttcaaatttaacaagtcattactgcactaagtatgtcagattat |
45313899 |
T |
|
| Q |
118 |
tacaaaaatattcaattgaataaatataatttaaacactaaacaagatagag-----ccaacaaaagaatcctaaagtgacaactacaatataagctaca |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45313898 |
tacaaaaatattcaattgaataaatataatttaaacactaaacaagatagagccaagccaacaaaagaatcctaaagtgacaactacaatataagctaca |
45313799 |
T |
|
| Q |
213 |
aaccatcacaatatattaaacactgatccaatgaacagaacagaacagaggtgagagtgatagtgacctgtagattgtcagccaacaccatagtaacata |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45313798 |
aaccatcacaatatattaaacactgatccaat-----gaatagaacagaggtgagagtgatagtgacctgtagattgtcagccaacaccatagtaacata |
45313704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 314
Target Start/End: Complemental strand, 27759669 - 27759377
Alignment:
| Q |
18 |
gcgcaccaatcactgacagtgtataaaaagaattttaagaaactaatctatgttttttcaaatttaacaagtcattactgcactaagtatgtcagattat |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
27759669 |
gcgcaccaatcactgaccgtgtataaaaataattctaagaaactaatctatgttttttcaaatttaacaagtcattactgcactacgtatgtcagattat |
27759570 |
T |
|
| Q |
118 |
tacaaaaatattcaattgaataaatataattt-aaacactaaacaagatagagccaacaaaagaatcctaaagtgacaactacaatataagctacaaacc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27759569 |
tacaaaaatattcaattgaataaatataatttaaaacactaaacaagatagagccaacaaaagaatcctaaagtggcaactacaatataagctacaaacc |
27759470 |
T |
|
| Q |
217 |
atcacaatatattaaacactgatccaatgaacagaacagaacagaggtgagagtgatagtgacctgtagattgtcagccaacaccatagtaacatatg |
314 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27759469 |
atcacaatttattaaacactgatccaat-----gaacagaacagaggtgagagagatagtgacctgtagattgtcagccaacaccatagtaacatatg |
27759377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 16927360 - 16927432
Alignment:
| Q |
141 |
atataatttaaacactaaacaagatagagccaacaaaagaatcctaaagtgacaactacaatataagctacaaa |
214 |
Q |
| |
|
|||| |||| |||||||| ||||||||||||||| |||||||||||| ||| |||| |||||||||||||||| |
|
|
| T |
16927360 |
atattattttaacactaagcaagatagagccaac-aaagaatcctaatatgataactgcaatataagctacaaa |
16927432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 95
Target Start/End: Original strand, 16927246 - 16927336
Alignment:
| Q |
4 |
acgcacacacgcccgcgcaccaatcactgacagtgtataaaaagaattttaagaaactaatctatgttttttcaaatttaacaagtcattac |
95 |
Q |
| |
|
|||||||||| || |||| ||||||| ||||||| ||| ||| |||| |||||| |||||||||||||| ||||||||| |||||||||| |
|
|
| T |
16927246 |
acgcacacac-cctgcgcgccaatcatagacagtgcatacaaataattccaagaaattaatctatgtttttccaaatttaaaaagtcattac |
16927336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University