View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8493_low_17 (Length: 320)
Name: NF8493_low_17
Description: NF8493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8493_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 25 - 304
Target Start/End: Original strand, 47100742 - 47101021
Alignment:
| Q |
25 |
tgtttcttcccaaaaactacaacgattgcaataaggatcactcaaactccacttagccattctagagttagtaagcaacccattattagttatttgccac |
124 |
Q |
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| T |
47100742 |
tgtttcttcccaaaaactacaatgattgcactaaggatcgctcaaactccacttagccattctagagttagtaagcaacccattattagttatttgccac |
47100841 |
T |
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| Q |
125 |
acaaaaactataatccgctccaaggactctatatgccagatttatttgccacacaaagtttaaagagtgtctcaaagcactcgttaacaagacccttatt |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||| |
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| T |
47100842 |
acaaaaactataatccgctccaaggactctatatgccagatttatttgccacacaaagtttaaagagtgtctcagaacattcgttaacaagacccttatt |
47100941 |
T |
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| Q |
225 |
taaaattactatctttctcttgaagcaaaatatttaaaatttatttaaaactactttttcaaattttgaattgtatatat |
304 |
Q |
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| T |
47100942 |
taaaattactatctttctcttgaagcaaaatatttaaaatttatttaaaactactttttcaaattttgaattgtatatat |
47101021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 229
Target Start/End: Original strand, 3027105 - 3027133
Alignment:
| Q |
201 |
gcactcgttaacaagacccttatttaaaa |
229 |
Q |
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| T |
3027105 |
gcactcgttaacaagacccttatttaaaa |
3027133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 28663240 - 28663286
Alignment:
| Q |
184 |
ttaaagagtgtctcaaagcactcgttaacaagacccttatttaaaat |
230 |
Q |
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| T |
28663240 |
ttaaagagtgcctcagggcactcgttaacaagacccttatataaaat |
28663286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 225
Target Start/End: Complemental strand, 11533238 - 11533194
Alignment:
| Q |
182 |
gtttaaagagtgtctc-aaagcactcgttaacaagacccttattt |
225 |
Q |
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|||||||||||||| | ||| |||||||||||||||||||||||| |
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| T |
11533238 |
gtttaaagagtgtcccgaaaacactcgttaacaagacccttattt |
11533194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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