View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8493_low_19 (Length: 295)
Name: NF8493_low_19
Description: NF8493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8493_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 32171587 - 32171310
Alignment:
| Q |
1 |
gaggaattaaattagtttagatcaaggtgaaaatataatctgtatgctggttgctgacatgcttannnnnnnnnnngaaagggttgctgacatgcttatt |
100 |
Q |
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| T |
32171587 |
gaggaattatattagtttagatcaaggtgaaaatataatctgtatgctggttgctgacatgctt-tttttttttttgaaagggttgctgacatgcttatt |
32171489 |
T |
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| Q |
101 |
gtcgtatgaaaattgctatgattatattttcatggatgtggtgcattcacaattcacaactgacaaacaactatctgatttatctgtttggtaggttaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32171488 |
gtcgtatgaaaattgctatgattatattttcatggatgtggtgcgttcacaattcacaactgacaaacaactatctgatttatctgtttggtaggttaat |
32171389 |
T |
|
| Q |
201 |
ataattcacgcctttgaaaattctttagaaaagaaggaaggtcgcattgatgctgacaagatggctgtgttgaatggtt |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32171388 |
ataattcacgcctttgaaaattctttagaaaagaaggaaggtcgcattgatgctgacaagatggctgtgttgaatggtt |
32171310 |
T |
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