View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8493_low_2 (Length: 463)
Name: NF8493_low_2
Description: NF8493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8493_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 19 - 447
Target Start/End: Original strand, 32833413 - 32833841
Alignment:
| Q |
19 |
agcaataattaaaagacatattagcaaaacttctgcatcaaaaaacacgaaatcaatcactggtataaaagatcagttatcagattacattagctcactt |
118 |
Q |
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| T |
32833413 |
agcaagaattaaaagacatattagcaaaacttctgcatcaaaaaacacgaaatcaatcactgctataaaagatcagttatcagattacattagctcactt |
32833512 |
T |
|
| Q |
119 |
tagaagtctatattgggatcacagaatgacttgcaggttagttcaatgtgcggaaaattgctagcatttgacatagtaaggactaaggagacaacaaaca |
218 |
Q |
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| T |
32833513 |
tagaagtctatattgggatcacagaatgacttgcaggttagttcaatgtgcggaaaattgctagcatttgacatagtaaggattaaggagataacaaaca |
32833612 |
T |
|
| Q |
219 |
acatttgacattgagtaccaaaccaaaaacataatcgaaaaatgcttaccgaggatcaagtccagataatgagagataaagccaaccagttggtttaaca |
318 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32833613 |
acatttgacattgagtaccaaaccgaaaacataatcgaaaaatgcttaccgaggatcaagtccagataatgagagataaagccaaccagttggtttcaca |
32833712 |
T |
|
| Q |
319 |
agttccacagctttaatctcctaaaaattaaaattcacaaattcagtcagtataatcaaattgatcaccaatcaaaccaatataaataaaactagcacaa |
418 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32833713 |
agttccacagctttaatctcctaaaaaataaaattcacaaattcagtcagtataatcaaattgatcaccaatcaaaccaatataaataaaactagcacaa |
32833812 |
T |
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| Q |
419 |
agctacaaacacacataataccggtacat |
447 |
Q |
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| T |
32833813 |
agctacaaacacacataataccggtacat |
32833841 |
T |
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