View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8493_low_20 (Length: 291)
Name: NF8493_low_20
Description: NF8493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8493_low_20 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 3 - 237
Target Start/End: Complemental strand, 40544750 - 40544518
Alignment:
| Q |
3 |
gatcaataatgaaaagatgagaaacaacattcccattattagaaatcccaatagatagccatcggttgacctccctcnnnnnnngaataagtagaactgg |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||| |||||||||||||||| |
|
|
| T |
40544750 |
gatcaataatgaaaagatgagaaacaacattcccattattagaaatcccaatagatagccatcggctcacc--cctctttttttgaataagtagaactgg |
40544653 |
T |
|
| Q |
103 |
tttctccatgcaaagcaagaatagctaatgagaaataaggtcccattgccttaacccttggttgggaataaaaatatcaagttgctcattattcgatttg |
202 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40544652 |
tttctccatgcaaagcaagaatagctaatcagaaatagggtcccattgccttaacccttggttgggaataaaaatatcaagttgctcattattcgatttg |
40544553 |
T |
|
| Q |
203 |
agatataaggtcgaggattagtgcaactcatgata |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
40544552 |
agatataaggtcgaggattagtgcaactcatgata |
40544518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 223 - 273
Target Start/End: Complemental strand, 40543369 - 40543319
Alignment:
| Q |
223 |
gtgcaactcatgataagattaaagacaataggagaaaaaccaaattccgac |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40543369 |
gtgcaactcatgataagattaaagacaataggagaaaaaccaaattccgac |
40543319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University