View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8493_low_24 (Length: 267)
Name: NF8493_low_24
Description: NF8493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8493_low_24 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 44974475 - 44974710
Alignment:
| Q |
17 |
ttttattcattcttcaaaatactaaaacccctttctaattttgcttcctttaatctctccctttattaaatattactgtgttcaaataagaaattttagt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44974475 |
ttttattcattcttcaaaatactaaaacccctttctaattttgcttcctttaatctctccctttattaaatattactgtgttcaaataagaaattttagt |
44974574 |
T |
|
| Q |
117 |
aataatttattgattaacgtttgaaactaactgtatctatgtgcatatataggagctattatcgttgcaccagtgtttcatgtaatgtgaagaaacacgt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44974575 |
aataatttattgattaacgtttgaaactaactgtatctatatgcatatataggagctattatcgttgcaccagtgtttcatgtaatgtgaagaaacacgt |
44974674 |
T |
|
| Q |
217 |
ggagaggtctttgagtgatccaaccattgtagtaac |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
44974675 |
ggagaggtctttgagtgatccaaccattgtagtaac |
44974710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 166 - 249
Target Start/End: Complemental strand, 38850067 - 38849984
Alignment:
| Q |
166 |
taggagctattatcgttgcaccagtgtttcatgtaatgtgaagaaacacgtggagaggtctttgagtgatccaaccattgtagt |
249 |
Q |
| |
|
||||||||| ||||||||||||| || |||||||||||| ||||||| ||||| | |||| | |||||||| ||||||||| |
|
|
| T |
38850067 |
taggagctactatcgttgcaccactgcttcatgtaatgtcaagaaacgtgtggaacgttcttatactgatccaagcattgtagt |
38849984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University