View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8493_low_25 (Length: 262)
Name: NF8493_low_25
Description: NF8493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8493_low_25 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 10562347 - 10562103
Alignment:
| Q |
1 |
aaccttacaacatcaaaggaagtacttaatgtacttaaccggatatggagtctagaagaacaacatgcatcaaatatatcagcagtgaaagccttaaaaa |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10562347 |
aaccttgcaacatcaaaggaagtacttaatgtacttaaccggatatggagtctagaagaacaacatgcatcaaatatatcagcagtgaaagccttaaaaa |
10562248 |
T |
|
| Q |
101 |
cggaactaaatcgctctcgaacacagatgaaggagttaatacgagagaaacaaatgaacagacaggaaatggagaaattaatgaagcaaatgacaattga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10562247 |
cggaactaaatcgctctcgaacacagatgaaggagttaatacgagagaaacaaatgaacagacaggaaatggagaaattaatgaagcaaatgacaattga |
10562148 |
T |
|
| Q |
201 |
aaaatttgttaggaagaataaagaacatgatagaattcaaactga |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10562147 |
aaaatttgttaggaagaataaagaacatgatagaattcaaactga |
10562103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University