View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8493_low_27 (Length: 253)
Name: NF8493_low_27
Description: NF8493
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8493_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 6186396 - 6186617
Alignment:
| Q |
18 |
agaatcaagtatttttcaatagtacctgttttgtcggtacaaatagtagtagcagatcccatagtctcacatgcagagagttttctcaccattgcttgat |
117 |
Q |
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| T |
6186396 |
agaatcaagtttttttcaatagtacctgttttgtcggtgcaaatagtagtagcagatcccatagtctcacatgcagagagttttctcaccattgcttcat |
6186495 |
T |
|
| Q |
118 |
cagccatcattttcttcattgaatatgcaagtgtcaatgtcacagctaatggcaaaccctcaggaattgcaacaacaacaatagtaacagcatcagcaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6186496 |
cagccatcattttcttcattgaatatgcaagtgtcaatgtcacagctaatggcaaaccctcaggaattgcaacaacaacaatagtaacagcatcagcaat |
6186595 |
T |
|
| Q |
218 |
aattccaataatcgcattcatc |
239 |
Q |
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|||||||||||| ||||||||| |
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| T |
6186596 |
aattccaataattgcattcatc |
6186617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 35 - 239
Target Start/End: Original strand, 4243357 - 4243561
Alignment:
| Q |
35 |
aatagtacctgttttgtcggtacaaatagtagtagcagatcccatagtctcacatgcagagagttttctcaccattgcttgatcagccatcattttcttc |
134 |
Q |
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| T |
4243357 |
aatagtacctgtcttatcagtgcaaatagtagtagctgatcccatagtttcacatgcagaaagttttctcaccattgcttgatcagccatcattttcttc |
4243456 |
T |
|
| Q |
135 |
attgaatatgcaagtgtcaatgtcacagctaatggcaaaccctcaggaattgcaacaacaacaatagtaacagcatcagcaataattccaataatcgcat |
234 |
Q |
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| T |
4243457 |
attgaataagcgagtgtcaatgtcacagctaatggtaaaccctcggggatagcaacaacgacaatagtaacagcatcagcaataattccaataactgcat |
4243556 |
T |
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| Q |
235 |
tcatc |
239 |
Q |
| |
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||||| |
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| T |
4243557 |
tcatc |
4243561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 72 - 202
Target Start/End: Original strand, 38358065 - 38358195
Alignment:
| Q |
72 |
gatcccatagtctcacatgcagagagttttctcaccattgcttgatcagccatcattttcttcattgaatatgcaagtgtcaatgtcacagctaatggca |
171 |
Q |
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||||||||||| ||||| || || ||||| |||||||| || ||||| ||||||||| | ||||| || || ||||| || | ||||||||| ||||||| |
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| T |
38358065 |
gatcccatagtttcacaagctgaaagtttcctcaccatagcatgatctgccatcattcttttcatggagtaagcaagagttagtgtcacagccaatggca |
38358164 |
T |
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| Q |
172 |
aaccctcaggaattgcaacaacaacaatagt |
202 |
Q |
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| T |
38358165 |
aaccctcagggatggcaacgaccacaatagt |
38358195 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 209
Target Start/End: Complemental strand, 47487560 - 47487502
Alignment:
| Q |
151 |
tcaatgtcacagctaatggcaaaccctcaggaattgcaacaacaacaatagtaacagca |
209 |
Q |
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| T |
47487560 |
tcaatgtcacagctaaaggtaaaccttcaggaacagcaacaacaacaattgtaacagca |
47487502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 39951669 - 39951730
Alignment:
| Q |
122 |
catcattttcttcattgaatatgcaagtgtcaatgtcacagctaatggcaaaccctcaggaa |
183 |
Q |
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||||||||||||||||| | ||||||| ||||||| ||||||||||| |||||||| |||| |
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| T |
39951669 |
catcattttcttcattgcaaatgcaagactcaatgttacagctaatggtaaaccctcgggaa |
39951730 |
T |
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